Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01752 ATGTCGTCATCATCAAATTCGCCGTGCGCGGCGTGCAAGTCTCTACGGCGGAAATGCACGCAAGAGTGCGTGTTCGCTCCGTACTTCCCACCGGACAACCCTCAGAGGTTCACTTACGTGCACAAGGTTTTCGGTGCCAGCAACGTGGCGAAGCTTCTGAACGAACTCAACGCCGCGCAGCGAGACGACGCCGTTAAGTCCCTGGCTTATGAGGCGGAGGCACGGCTGAGGGACCCTGTTTATGGCTGCGTGGGCCTCATCTCCGTCCTCCAACACAAGCTGAGGCAGATCCAGGTGGAGCTAAGCAATGCTAAGAAGGAGCTTGCAACTTATATTGGGCCCCAAGCTCTACAAGGCATGCCCACCACTATTCTCCAACAACACCCCAATAACCCTTTTACCTCTTCTATTTATCCTTATAATGGTAACATGCCGGCTGTGACGGCGGCTACGCAGTTGGTGATTCGGGACCCTCAGCCGCCGCAACATCAGATCTTGGAAGCTCAGCAATTGGCTGCGGCTGTGGCAGCAAGAGAGCAGCAGGAGATGTTTAGGAGTTATGAGCATCAACATCAGCAAGAGTTTTTGAGGTTCAGTGGTGGGTTCGATGTGGGTTCGGTTTCTTCTGGTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGCTGCTTCGGCTGATCAGTTGTCTCCTTCTTTGGCTTTGGGTTCCTTTGATAACACTTACCATATGCAGCAACCACAGCAAGGAGAACCTCATCCTCACCACCTTCCACTTCAGGCACAACTATTGCTCCCTCCGCAGCAGAAGCAAGCGCAGCCTCAAACTCAGCAGTCACAGCTGCCCCACCACCAGCAACATTCGGAAAGCGAGGAGTGTAGGAGTGTTGGTCCGTCTTGTTGA 897 0.5418 MSSSSNSPCAACKSLRRKCTQECVFAPYFPPDNPQRFTYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELSNAKKELATYIGPQALQGMPTTILQQHPNNPFTSSIYPYNGNMPAVTAATQLVIRDPQPPQHQILEAQQLAAAVAAREQQEMFRSYEHQHQQEFLRFSGGFDVGSVSSGGGFSQVSPAAAASADQLSPSLALGSFDNTYHMQQPQQGEPHPHHLPLQAQLLLPPQQKQAQPQTQQSQLPHHQQHSESEECRSVGPSC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01752 298 Coils Coil 87 107 - -
Rops1g01752 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 273 - -
Rops1g01752 298 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Rops1g01752 298 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Rops1g01752 298 MobiDBLite consensus disorder prediction 263 282 - -
Rops1g01752 298 MobiDBLite consensus disorder prediction 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01752 Rops-Chr1 36370521 36373798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01752 3 292 AS2 family AT5G66870 48.758 1.24e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops1g01752 LOB 5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01752 - - gmx:102664012 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01752 1 36370521 36373798 Rops1g01752 1 36370521 36373798 ECH
Rops1g01752 1 36370521 36373798 Rops2g03492 2 64528220 64536068 PCT