Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01750 ATGGAGCTAAGCTTGGATTTGAGTTTGGCCTTTGTCCCCAAAACCGTTTCTTTGTTTCTTGGTGACGTTTCTAGAAGCAAAGACATATCTGAGAAACTGGCCTTGCTTGAGAACTTTGTGCAAAGACTGGAGGATGAAATGAGAAAAGTAGAGGCCTTCAAACGCGAACTCCCTCTTTGCATGCTCCTCATAAACGATGCCATTACAAGATTGAAAGAAGAAAAAATCCGGTGTATGGGAATGCAAGATCCACCAGTGACTGAAGAATTCATGCCACTGAAAACTAATTATGGAGGAAATGGAAATGGAAATGGAAAAGGACCCTTGACCATGGCAAAGGAAAGTGGTGACAAGAAGAATTGGATGAGTTCAGTTCAGCTATGGACCACTGAAACCAAATTGAGGAATGAAGAAGATGATAGGTCTGTGCTAGATAACCCAATTCAGCAACGGGATCAGAAGAACAATAGTGGAGGAACATTGATCGCATTTAATGGAAATTCGTGTGTACCCAAGGAGGTTTCTTCACAAGTTCCAAGCTTTAGTTTAATGAGTCCTGCATCTGAACTGAGTCATAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGTTCTGGCTCTTCTTTGCTCCGTGTTGAGATGCAGAGTCAACCACAACATCTGCAGCAGAATCCAAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGACGTTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCAACTCCTAAACAAATTAGAGAACTGATGCAGGTGGAAGACCTAACAAATGATGAAGTGAAAAGCCATCTGCAAAAGTATAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGGTCAGGCTAATAGTGGCTTATGGATGGGCCAAGATCAATGTGGAGATAAATCAAAGGGAAACTTATCACAATCTGGTTCTCCACAAGGTCCTCTTACACCTCTTCTAGTAGGGTCTGTTAAGGGTCTCTCAAGCCCTGGAAGAAACAGTATGGATGCAGAAGATGAACAATCAGATTGCCGTAATTGGAAAGGTGGGGTCCAGCAGCAACTAGAAGCTGATAATCAAAGCCTCTAA 1107 0.4318 MELSLDLSLAFVPKTVSLFLGDVSRSKDISEKLALLENFVQRLEDEMRKVEAFKRELPLCMLLINDAITRLKEEKIRCMGMQDPPVTEEFMPLKTNYGGNGNGNGKGPLTMAKESGDKKNWMSSVQLWTTETKLRNEEDDRSVLDNPIQQRDQKNNSGGTLIAFNGNSCVPKEVSSQVPSFSLMSPASELSHSNSKSGCGGSSSGSSLLRVEMQSQPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEDLTNDEVKSHLQKYRLHVRRFPVSSIGQANSGLWMGQDQCGDKSKGNLSQSGSPQGPLTPLLVGSVKGLSSPGRNSMDAEDEQSDCRNWKGGVQQQLEADNQSL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01750 368 MobiDBLite consensus disorder prediction 298 368 - -
Rops1g01750 368 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Rops1g01750 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 353 IPR044787 GO:0003700|GO:0006355
Rops1g01750 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 226 281 IPR006447 GO:0003677
Rops1g01750 368 FunFam Myb family transcription factor 225 283 - -
Rops1g01750 368 MobiDBLite consensus disorder prediction 133 147 - -
Rops1g01750 368 MobiDBLite consensus disorder prediction 352 368 - -
Rops1g01750 368 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Rops1g01750 368 MobiDBLite consensus disorder prediction 133 160 - -
Rops1g01750 368 MobiDBLite consensus disorder prediction 185 207 - -
Rops1g01750 368 MobiDBLite consensus disorder prediction 298 322 - -
Rops1g01750 368 Coils Coil 26 56 - -
Rops1g01750 368 Gene3D - 225 282 - -
Rops1g01750 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01750 Rops-Chr1 36322776 36324720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01750 1 276 G2-like Transcription Factor Family AT4G37180 41.993 4.61e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g01750 Myb_DNA-binding 6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01750 - - pvu:PHAVU_002G021400g 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03486 2 64267089 64269083 Rops1g01750 1 36322776 36324720 PCT