Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01747 ATGGATCGGCCGGCGGTGGCGATGGAGATGCCGATCATGCACGATAGCGACCGGTACGATTTAGTCCGAGATATCGGTTCCGGGAATTTCGGCGTCGCTAGGCTCATGAGAGATAAGCACACCAAAGAGCTTGTTGCTGTCAAGTATATTGAACGTGGAGATAAGATTGATGAAAATGTCAAGAGAGAAATCATTAATCACAGGTCTCTGAGACACCCTAACATAGTCAGATTTAAGGAGATCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTATTTGAGCGAATCTGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTACTTCTTTCAACAGCTCATATCTGGGGTCAGCTATTGTCATGACATGCAAGTTTGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGTCCATCACTTCGTTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTTTTGCTGAAGGCAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTTGTGGGATCATATCCGTTTGAAGATCCTGATGAACCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAATATTCCATTCCTGACTTTGTTCAAATATCTCCTGAATGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCGTGAAATATTGAAAAATGAATGGTTTCTGAAGAATCTTCCTGCTGACTTGATGGGTGAAAAGATAATGAGTAACCAATTTGAAGAGCCTGATCAGCCCATGCAGAGCATTGATACAATCATGCAGATAATTTCAGAAGCTACCATACCAGCAGCTGGGACCTATTCTTTAGACCAGTTAATGGCTGATAACATTGATATAGATGATGACATGGATGACTTAGACTCTGAATTTGAGCTTGATGTAGATAGTAGTGGGGAGATAGTGTATGCCATGTAA 1077 0.4253 MDRPAVAMEMPIMHDSDRYDLVRDIGSGNFGVARLMRDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEIILTPTHLAIVMEYASGGELFERICNAGRFTEDEARYFFQQLISGVSYCHDMQVCHRDLKLENTLLDGSPSLRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKAEYDGKIADVWSCGVTLYVMLVGSYPFEDPDEPKDFRKTIQRVLSVQYSIPDFVQISPECRHLISRIFVFDPAERITIREILKNEWFLKNLPADLMGEKIMSNQFEEPDQPMQSIDTIMQIISEATIPAAGTYSLDQLMADNIDIDDDMDDLDSEFELDVDSSGEIVYAM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01747 358 ProSiteProfiles Protein kinase domain profile. 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01747 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Rops1g01747 358 PANTHER SERINE/THREONINE KINASE 18 295 - -
Rops1g01747 358 FunFam Serine/threonine-protein kinase SRK2E 10 94 - -
Rops1g01747 358 SMART serkin_6 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01747 358 Pfam Protein kinase domain 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01747 358 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Rops1g01747 358 SUPERFAMILY Protein kinase-like (PK-like) 11 311 IPR011009 -
Rops1g01747 358 FunFam Serine/threonine-protein kinase SRK2E 95 283 - -
Rops1g01747 358 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Rops1g01747 358 Gene3D Transferase(Phosphotransferase) domain 1 95 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01747 Rops-Chr1 36294046 36299780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01747 12 278 CBL-interacting serine-threonine protein kinases AT4G24400 42.545 4.04e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Rops1g01747 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01747 K14498 - gmx:100783967 630.943