Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01743 ATGATCCAAGAAATGTTAGGTGGTGCTAGCCTCTTAGATGGAGAAAGGAAAATCTCCATTAGTGGAGGAGTTGTACTACCACACACACCTTCTCTTTCTTCTCTCCTTTCTTCACCTTCTCCTTCTTCCATAGCAAGTGTTACCACTACTTCTACCGCTACCACAACCACCACCTCATCAAATTCAGAAAATCAAAATTTGAGGTGCCCACGATGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACGTGTCGCCGTTACTGGACCAAAGGAGGTGCTCTCAGGAATGTTCCGATTGGAGGTGGATGCCGGAAAAACAAGAACGCCGGCGTGTCCAACTCGGTGGCAAAGGCAAGTGCTACAAAGATGAAAGCAGTATCATCGGAGCTTGGAAGATCAGGACTTGGTTCTGGATTCGACCATGAGCTTCTTCCACCAAGCCCAATCTTGTGGGGTTCGCCGCAAAATACTCATCTTTTGGCTTTTCTGAGAGCTAGCCAAAACGAAAACCCTAACCCTAGTTCAAACCCTAACCCTATTCCCATGTCCATTAATGGTGTTACAGTTAAGGAAGAAGGGAACTTAAGATCCCAGTCCCACATGGTGTCTGAACCATTACTTGCAAATGGGTTGTTGAATCCTAGAACCCTGGCCTATGATGCTGTTGGACAAGTTCCTTCAATGGGTCTATGTAGCTCTTTTTGGAGAAACGATAATCACGATCAGATTCAACAACAAAATCACAGCTTTGTACTTGGAGAACATCAAAGCAGCGGAATTCAAGAACTTTACCACAAACTCAGGTCGTCATCAGTTAATTATTGCAGTGATAACTTACCAATGTTCATGGGAAACATGGCTTCTTCCTCTTCTTTATCCAACATTTTGGAGTCATCTTCTGTTTCTGGGAGTGAATTCGGGTGCTGGAATCCAACTCTTTCATGGTCTGATGTTCCCACAACACATGGTGCATATCCTTAA 1020 0.4431 MIQEMLGGASLLDGERKISISGGVVLPHTPSLSSLLSSPSPSSIASVTTTSTATTTTTSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNAGVSNSVAKASATKMKAVSSELGRSGLGSGFDHELLPPSPILWGSPQNTHLLAFLRASQNENPNPSSNPNPIPMSINGVTVKEEGNLRSQSHMVSEPLLANGLLNPRTLAYDAVGQVPSMGLCSSFWRNDNHDQIQQQNHSFVLGEHQSSGIQELYHKLRSSSVNYCSDNLPMFMGNMASSSSLSNILESSSVSGSEFGCWNPTLSWSDVPTTHGAYP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01743 339 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Rops1g01743 339 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Rops1g01743 339 MobiDBLite consensus disorder prediction 32 66 - -
Rops1g01743 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 263 IPR045174 GO:0003700|GO:0006355
Rops1g01743 339 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01743 Rops-Chr1 36258119 36259406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01743 63 167 C2C2-Dof Transcription Factor Family AT1G51700 55.856 5.87e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops1g01743 zf-Dof 3.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01743 1 36258119 36259406 Rops1g01743 1 36258119 36259406 ECH
Rops1g01743 1 36258119 36259406 Rops2g03458 2 63737250 63738647 PCT