Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01741 ATGCTGGAAAATCTGAGATATAATATGAAGCGGGCAAGGAAATCAAACAGGGTTTCGTGGGCTCGTGGATCTAATCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGTCCTTCGAAAGTTGGCCAGAAATTTCAAAACCACCTTCAAGCAAAGACACCGTCAATGTTGCCTTCCAGTACTAATGAATATGATGATTTACCACCGGGGTTTGAAGGGAATCATTTCATGAACCAATCAAAGGCTGAACTATCTCACATTTCTCAGATTAAATGGCAATGCCCTCCTGCGTTTGCTTTCAGTCATCATTGGCGCGTTGCAGCTGGTGAAGAAAGTGAGGAGAAAGAATATCAGAAGATAAGAGAAATGAGAGTGCTGGAAGCAGTTTATCCTCGTCTATCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTTGAGGTAGAGGAGGAAGATTATGATGATAACCTCACTGCTCACATCCCAATGATTCCTATTGAGGAAGAACAATCTATTGATCTTAAACCTGAACTTGCACCCACAAAACCTTTGGACACTCCCTCCAAGTTGCAGTCACAAAGCTTGCCACAATATATATCATCAGCAACATCTCCCATAAATTCACAATGCAAAACCTCCTCTTCTACTGTTCCCTCCTCTGCTTGTGGAAAGCCCATACCTGGGACGGCTCCTTGTTTGGGGACAGATTTAGCTGCAGCTTCTGCTGTTGTAGCAGCCATCATGAAAAGCAGTGAACAAGGAAGCTTGATTGATATGGATCTACTCCTGAGAATATTTAATGACCCAATAATGATCGAGAGGTTAATTAACGAATACAAACCTGCATCTTCTGATGCTGTGGGTATGCCCACTTCTGAATTAAAACCTGTAAATACACCTACAAGTGCAATGGGGTTATTACCTGCTTCTGGGCCAAAACAAGCAATTCAATCAGAGTCATTATTGACACCCACAACTGAGAAGCCAGCAATCTCATCTGTTTCAGTGTTGAATTCTCCTACTTTTGATAAGCCCGCAACTCCATCAGTTCCTTTGTTCAGGCCTGGATTTGGTAACTCAGTAGCAACTCACCCAGTTACACTGCCTATACCTCCACCTCCATCTGCACCTACCCTTCTCATGCATAGACCTGCCAACAAAAATATTCCTCATATGTTAAATGGAGTGCTGCCCAATTTAAATACCCATTCTCCTCAACAAGATACAGTTCTGTCATCTGGGGTAAAGCGATCAGCATCAATGGCTTCTATTTCCTCCAGTGAATTAAGCACGGCGGCATTGCCTTCTGTATCTTTGAAATTGCATGGAGTTAAAAACCAGGTGCCATCCACTGCTAGTACAGTGCCTTATCCATCAGGTACTGGTTCAGCATTTGCTGTGAAAGATGCCAACTATTACAAAAATCTTATTCGGCAACACGGGGCAGATAAGCAAGATATGCAGGAATCACAAATAGGTATCTGTAATAATAATTTCGAGGATTTAAAATCGACACATGACATCATTAAACCGGGGGAAATGGTATTCAAAACTCAGAAACCATGCATATATTTTAGAAGCTCAAGAGGGTGCCGGAATGGTTCCAATTGCCCTTATAAGCATGATATGTCAGTTCAGTTTGGAGCTGGTGATGTCCTAGTGACCCAAAGTGCGAAAAGAATGAGACTAGGACCAGAAATTAAGGGGTGTATATAA 1710 0.4222 MLENLRYNMKRARKSNRVSWARGSNLCQVKLFLSEDCPSKVGQKFQNHLQAKTPSMLPSSTNEYDDLPPGFEGNHFMNQSKAELSHISQIKWQCPPAFAFSHHWRVAAGEESEEKEYQKIREMRVLEAVYPRLSAIPPSPSVSFEVEEEDYDDNLTAHIPMIPIEEEQSIDLKPELAPTKPLDTPSKLQSQSLPQYISSATSPINSQCKTSSSTVPSSACGKPIPGTAPCLGTDLAAASAVVAAIMKSSEQGSLIDMDLLLRIFNDPIMIERLINEYKPASSDAVGMPTSELKPVNTPTSAMGLLPASGPKQAIQSESLLTPTTEKPAISSVSVLNSPTFDKPATPSVPLFRPGFGNSVATHPVTLPIPPPPSAPTLLMHRPANKNIPHMLNGVLPNLNTHSPQQDTVLSSGVKRSASMASISSSELSTAALPSVSLKLHGVKNQVPSTASTVPYPSGTGSAFAVKDANYYKNLIRQHGADKQDMQESQIGICNNNFEDLKSTHDIIKPGEMVFKTQKPCIYFRSSRGCRNGSNCPYKHDMSVQFGAGDVLVTQSAKRMRLGPEIKGCI* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01741 569 ProSiteProfiles Zinc finger C3H1-type profile. 514 542 IPR000571 GO:0046872
Rops1g01741 569 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 9 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01741 Rops-Chr1 36214951 36220138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01741 89 160 Homeobox Transcription Factor Family AT4G02560 43.056 4.20e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops1g01741 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01741 - - adu:107488052 617.846