Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01723 ATGTTTCTTCATCACAAGTCAAATTTCGCAATCGTGATCATAATCTCCTTGGCGTTCACGACAAGAGCAGAAAACCTCACAGACTGTCAGACTCGCTGTGGAGAGGAATCTTTGCTATACCCTTTTGGTTTCTCAGAAGGTTGTGGTATCCGACTAAATTGTTACAACAACAAAGCCCAAATTGGTGATTTTGTGGTTCAGAATGTAACTAACAGTAGCATATTCATCTATCTCCCTGCAAAATGCAACCGTAGCATGCAATCCATTCAACCACTTTTCAGTGACAACTTTGCTCCCACAAGGAACAATAGCTTTCTGGTGCAAGATTGCACAGTTCCACAGGGTGGTTGCGTTATTCCTGCTTCTAGTTTTATAGGAAATCAGATTGAGGCTGAGAACTGCAATAACAAAAGTGGTAATATCAGTTGCTTTACACAGCAGCAACATGATCTTGTGACATATGAGGAATTGAATCGAACTGGGTGCAACTACTTGTTCTCAGCAGTTGCTATTGTGCAGGTAAAAGAGATTTCTTTGGAGTTTCAGGCTGTTGAGTTAGGTTGGTGGCTTCAAGGTTCGTGTCAATGCTCTCCCAATGCTACTTGCACAACGGTTCCTCTACAAGGCGGGAACTCCGGGTTCAGGTGTCAGTGTCTCGATGGTTTCCGGGGAGATGGCTTCATCAATGGCACCGGTTGCCGGAGAGCTTCAAGTTGCAGTGCTTCAACTCTGACGTCTGGGGGATGTGGAAATGCCACCAAAATTGGTGTTGTCGTTGGAGTGGTCGTAACTGGAGTTTTGGTCGTGGCTGCTCTCTTTCTTCTATGCTACTGTGCCAGGCGCCGTTCTACTTGGTTGAGAAAACATACCGAAGTAAAGCACCTATTACATGAAGCTGCAGGAAACTCCAGTGTACCTTTATACCCTTACAAAGAAATAGAAAAAGCCACAAATTCTTTCTCTGACAAACAGAGGTTGGGAACTGGGGCTTTTGGTACAGTTTATGCTGGAAAACTTCACAATGATGAGTGGGTTGCTATAAAGAAGATAAGGCATAGAGACACCAACAGCGTTGACCAAGTCATGAATGAAATCAAGCTCCTTTCTTCGGTGAGTCACCCAAATTTAGTTCGCCTCCTAGGTTGCTGCATAGAGGAGGGAGAGCAGATACTTGTTTATGAATATATGCCCAATGGAACACTATCTGAGCATTTGCAAAGAGAGAGGGGTAAGGGTCTTCCATGGACAATAAGACTTACCATTGCTGCTGAAACTGCTAATGCTATAGCATATCTCCATTCTTCAATTCATCCCCCAATTTACCATAGAGACATAAAATCTACTAATATACTCTTGGATTATAGCTTCAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCATATATCTCAACTGCTCCACAAGGCACTCCAGGTTATGTGGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAGAGTGATGTCTACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACAGCCCTGAAAGTGGTTGATTTTGGTAGACCTCAGAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGAATTAGGAGGGGTTCTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGAGATGCTTGGACACTATATTCCATTCATAAGGTGGCTGAACTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATGGAAGTGGCTGAGGAGCTGGAACATATCAGACGTAGTGGATGGGCAACCATGGAGGAAAGCATATGCATGGCTTCATCTGTTGGGTCCGTGTGTTCATCACCTCGCAATGGAAGTGAGAAGTCACTGAGTGGTATTAAAATTAAGAAAGTTGGGCAAGAGAGTGAAGGATTGATTGTTCCACAGAATACTGAGAGTTTTTTGCAATCTATGGAAGTGAAGGACAGCTCCCCTGTATCAGTGCACGATCCTTGGTCAAGTCCACAAAGCTCACCTTCTTCAAACAGCTTGTTGGGAAATGCCGTTCGGTGA 2067 0.4354 MFLHHKSNFAIVIIISLAFTTRAENLTDCQTRCGEESLLYPFGFSEGCGIRLNCYNNKAQIGDFVVQNVTNSSIFIYLPAKCNRSMQSIQPLFSDNFAPTRNNSFLVQDCTVPQGGCVIPASSFIGNQIEAENCNNKSGNISCFTQQQHDLVTYEELNRTGCNYLFSAVAIVQVKEISLEFQAVELGWWLQGSCQCSPNATCTTVPLQGGNSGFRCQCLDGFRGDGFINGTGCRRASSCSASTLTSGGCGNATKIGVVVGVVVTGVLVVAALFLLCYCARRRSTWLRKHTEVKHLLHEAAGNSSVPLYPYKEIEKATNSFSDKQRLGTGAFGTVYAGKLHNDEWVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIAAETANAIAYLHSSIHPPIYHRDIKSTNILLDYSFKSKVADFGLSRLGMTETSYISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFGRPQSEVNLAALAVDRIRRGSVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIRRSGWATMEESICMASSVGSVCSSPRNGSEKSLSGIKIKKVGQESEGLIVPQNTESFLQSMEVKDSSPVSVHDPWSSPQSSPSSNSLLGNAVR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01723 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Rops1g01723 688 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Rops1g01723 688 Gene3D Transferase(Phosphotransferase) domain 1 396 611 - -
Rops1g01723 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 675 IPR044652 GO:0004672
Rops1g01723 688 Pfam Protein tyrosine and serine/threonine kinase 323 592 IPR001245 GO:0004672|GO:0006468
Rops1g01723 688 SUPERFAMILY Protein kinase-like (PK-like) 301 593 IPR011009 -
Rops1g01723 688 ProSiteProfiles Protein kinase domain profile. 320 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01723 688 Gene3D Laminin 194 229 - -
Rops1g01723 688 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Rops1g01723 688 SMART serkin_6 320 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01723 688 MobiDBLite consensus disorder prediction 655 688 - -
Rops1g01723 688 FunFam Wall-associated receptor kinase-like 14 287 395 - -
Rops1g01723 688 FunFam Wall-associated receptor kinase-like 20 396 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01723 Rops-Chr1 36048602 36053013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01723 1 688 Receptor kinase-like Gene Family AT2G23450 58.475 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops1g01723 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01723 - - gmx:100779130 1050.81