Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01710 ATGGAAGTACTTCCTTGTTCTGGAGTTCAATATGCTGGGGAATCTGATTGTCCTCAGCGGAGTTCAGGAACAGCTTTTGTATTCCAGGAAGAACCTAATGGCCCTGAAAGTGGTGAACAAGCTAAATTCACAGATGGTCAACTGAATGAATCATCGCATAAGTTGCAAGGGCCACAGATAGAAAGGCAAGGTGAAGGGAAACAAACTGTTTGTGACTTGCCAACTAATTCAGATTGTCAATGCATTGGAGCTTCATGTGGTGACTGCCAAGTGGAAAACCAAAAGGAATACTGTGTTTTCGATGATTTTGAAGAAGATGTCATAAATGAACCTTGCTTAACCTCTGAGAACTCTCTCTCTGTTGTGGATACAATTGAAAATGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCATATTCTGAACCCAAGTGGCTAGAGGGGGATGGATCTCTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCGAAACCAACTCATGACCGAAAGAAATATTTTGTTATATTTTTTCCACACACACGGATTTATTCTTGGGCAGATATGTTGCTGGTTCGATCAATCAATGACTTTCCCCATCCTATTGCATATAAGACTCATCAAGTAGGATTGAAAATGGTAAAAGACTTAACGGTTGCTCGGAGGTTTATAATGCAAAAGCTAGCTGTTGGCATGCTGAACATCATTGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCCCGTGATGTTAAGGTCTGGAAGGGATTTGCTATGGAGGCTTCTCGTTGTAATGGTTATTCTGATCTTGGAAGGATGCTTCTAAAGCTATATAATAGCATACTGCTGCACTACATAAATGCTGACTGGTTACACCATTCTTCTCACTCTTGGGTTGAAAGATGTCAGAGTGCAAATAGCGCTGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGATGGACCGGTGCAATCAACATTAGGCTTAGAATGGAAAACCTGGAAGCACGATGTAATGAAATGGTTTTCAACATCACCTTCCTTATCTAGCAGCAAAGACACACAGCAGCAGATTTTAGATGATTCGTACCAAACAAACCTTCAGGTTTGTAGAAAAAGGCCTAAACTTGAAGTTCGTCGTGCTGATACACATGCTTCACAAGTGGAAACAACGCGTTCAGATCACCCTATTACTCTTGAGACTGACCCTGGCTTCTTTAAGAATCAGGACACATTGTGCACATTAGCAGCTGAGACTTGTAAACAGGATGATATTAGGGAAGTATCTATAGCAACTGATTTGCCCAGTAATTTGACCAATAATTGGAATGAAATTGTAGTTGAGGCAGCCCCTTCTGATTTCTTGCATACAAAAGGAATGGAATTGACACCTATAAATGAAATGGCTGTTGCAAAATCTGTAGAACCTGGCAGTAAGAATCGACAATGTACAGCTTATATTGAAGCCAAGGGCAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATATTGTTGCGTGCATTTGTCCTCCCGTTTTTTAGGTGGCTCAGCAAAAGCTGAAAAGCTGGTTCCAATTGATACTCCCATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGCAAGCATCGGGCCCTACCTGGCTCTTTATTCTGCAAGAAACACCGGCCCCATGTTGAAACAGAACTTACCTCAAATTTACCCGAGAGTACACTAAAGAGGAAACATGAAGAAAATCATACTGGTTCAGAGGACACGTTCTGCAAAGACATGGTATTGGTGAATGTTGAAGGTCCACTGCAAGTGAATCCAGTGTCATCCATTGCTGGTGATTCCTTACTTGGAGAAAGTAACTTGTCAGGGAAGCCCCCCATGCATGCTGAAAGTGATCACAGTGCAATGGAGGCACTGAACTGTATAGGTTCTCCTCCCTTTGATAACAAGAATCCTTGTAGGGAAGCTCCTAAACGCTATTGCTTGTACTGTGAGAGACACCTTCCAAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTCGAATAGTATCGAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGGTCCATCTGCATAAAGCATGCGAGCTTTTTTACAGGCTTTTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATGCTAGTGTTGGAGAATTTTTTAAAAAATTGGTTCATAGTGAAAAAGCAAGACTCAAATCGATATGGGGATTCAATGATGACATGTTTGTATCCTCTGCTGTGGAAGAACAACCTCTCTTGTCATCCATAATTAATGATAACGTTGATAATGAAAATGCTATTAAGTGTAAGATATGCTCTGCGGAATTTCCTGATGACCAAGCGCTTGGTAACCATTGGATGGACAGTCATAAAAAAGAAGCACAGTGGCTGTTTAGAGGTTATGCTTGTGCCATTTGCCTGGATTCTTTTACCAACAAGAAACTGTTGGAAACCCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAACAATTATGGCAGCATGTTTTATCAGTTCATCATATTGATTTGAAGCCTTCAAAAGCTCCTGAGCAGCAAACTTTCTCTACTGGTGAAGATTCACCTGTAAAACATGACCAGGGAAATTCAGCCCCTTTGGAAAATAATTCTGAGAATCCAGGTGGTTCACGGAGGTTTGTTTGCAGGTTTTGTGGGTTGAAATTTAATTTACTACCTGACCTAGGTAGACATCACCAAGCTGCTCATATGGGGCCCAATCTGGTTAGCAGCCGTCCTGCTAAGAGGGGAGTTCGCTATTATGCATATAGATTAAAATCTGGCAGACTTAGCCGCCCTAGATTTAAAAAAAGTTTGGCAGCAGCATCATACAGGATGAGAAATAAGGCTAATGCAAATTTAAAGCGATGTATTCAGGCAGCAAACTCACATGAAGTGGAAGGAACAACCGTACAACCTCATATAACTGAAACAACAAATATTGGTGGATTGACAGAACACCAATGCTCAGCTGTTGCAAAAATATTGTTTTCAGAGATTCAGAAAACAAAACCTCGGCCTAACAATCTAGATATTTTATCAATTGCTCGCTCTGCTTGTTGCAAAGTTAGTCTTGTAGCCTCCCTGGAGGAGAAATATGGAATGCTGCCTGAAAAGATCTATCTGAAGGCTGCAAAACTTTGCAGTGAGCATAATATTATTGTGAATTGGCACCAGGACGGGTTCGTTTGTACTAGAGGTTGTAATGTTTTGAAGGATCAAGCCTTGCTCTCTCCTCTAGCATCTCTTCCTAATGGTTTTGTAATGCCAAAATCTGTAAATTTATCTGATCCTGGAAGTGATGAGTGGGAGGTGGATGAGTTTCATTGCATCATCAATTCACGCAGTTTAAAATTAGGTTCGCAGCAAAAGGCTGTAGTCTTGTGTGATGATATTAGCTTTGGGAAGGAGTCAGTTCCGGTGATTTGTGTGGTAGATCAAGAACTTCTGGATTCTCTACATGTGCACAGGTCTAATGAACAAGATATAAGCTCCTCAGCACCTTGGGAAAGCTTTATGTATGTTACGAAACCAATGCTTGATCAATCGCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTGCCTGCTCACATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTATGTCGATGCGAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTAGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATGTGTGCAGATGCAATAAATCCTGTCCAAACAGAATATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGGTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAGTACATTGGAGAGATTTTAGATGTGCAGGAGGCACACAACAGGCGCAAGAGATATGACACAGGGAATTGTGGTTATTTCTATGACATCAACGCTCGTGTTAATGACATGAGCAGATTGATTGAAGGACAGGCCCAATATGTAATTGATGCTACTAAATATGGAAATGTGTCAAGATTCATCAATCAAAGCTGCTCGCCCAATCTTGTAAATCACCAAGTTCTCGTAGAGAGCATGGATTGTGAGCGTACACATATTGGTTTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACATATGACTTTCAATATGAGCTTGAGCCTGGAGAAGGATCTCCTTGTCTTTGTGAATCAGTGAAGTGTAGGGGACGCCTTCACTAG 4518 0.4157 MEVLPCSGVQYAGESDCPQRSSGTAFVFQEEPNGPESGEQAKFTDGQLNESSHKLQGPQIERQGEGKQTVCDLPTNSDCQCIGASCGDCQVENQKEYCVFDDFEEDVINEPCLTSENSLSVVDTIENESPNNSREGDLSYSEPKWLEGDGSLALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINDFPHPIAYKTHQVGLKMVKDLTVARRFIMQKLAVGMLNIIDQFHFNALTETARDVKVWKGFAMEASRCNGYSDLGRMLLKLYNSILLHYINADWLHHSSHSWVERCQSANSAESVELLKEELFDSILWNDVNTLWDGPVQSTLGLEWKTWKHDVMKWFSTSPSLSSSKDTQQQILDDSYQTNLQVCRKRPKLEVRRADTHASQVETTRSDHPITLETDPGFFKNQDTLCTLAAETCKQDDIREVSIATDLPSNLTNNWNEIVVEAAPSDFLHTKGMELTPINEMAVAKSVEPGSKNRQCTAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGGSAKAEKLVPIDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHVETELTSNLPESTLKRKHEENHTGSEDTFCKDMVLVNVEGPLQVNPVSSIAGDSLLGESNLSGKPPMHAESDHSAMEALNCIGSPPFDNKNPCREAPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDASVGEFFKKLVHSEKARLKSIWGFNDDMFVSSAVEEQPLLSSIINDNVDNENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLSVHHIDLKPSKAPEQQTFSTGEDSPVKHDQGNSAPLENNSENPGGSRRFVCRFCGLKFNLLPDLGRHHQAAHMGPNLVSSRPAKRGVRYYAYRLKSGRLSRPRFKKSLAAASYRMRNKANANLKRCIQAANSHEVEGTTVQPHITETTNIGGLTEHQCSAVAKILFSEIQKTKPRPNNLDILSIARSACCKVSLVASLEEKYGMLPEKIYLKAAKLCSEHNIIVNWHQDGFVCTRGCNVLKDQALLSPLASLPNGFVMPKSVNLSDPGSDEWEVDEFHCIINSRSLKLGSQQKAVVLCDDISFGKESVPVICVVDQELLDSLHVHRSNEQDISSSAPWESFMYVTKPMLDQSLSLDSESLQLGCACSHSTCCPETCDHVYLFDNDYVDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHVCRCNKSCPNRILQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEILDVQEAHNRRKRYDTGNCGYFYDINARVNDMSRLIEGQAQYVIDATKYGNVSRFINQSCSPNLVNHQVLVESMDCERTHIGFYASRDIALGEELTYDFQYELEPGEGSPCLCESVKCRGRLH* 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01710 1505 ProSiteProfiles SET domain profile. 1350 1482 IPR001214 GO:0005515
Rops1g01710 1505 SMART preset_2 1207 1334 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01710 1505 SUPERFAMILY SET domain 1200 1495 IPR046341 -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 14 28 - -
Rops1g01710 1505 SMART c2h2final6 889 912 IPR013087 -
Rops1g01710 1505 SMART c2h2final6 855 878 IPR013087 -
Rops1g01710 1505 SMART c2h2final6 821 844 IPR013087 -
Rops1g01710 1505 SMART c2h2final6 958 981 IPR013087 -
Rops1g01710 1505 Gene3D Classic Zinc Finger 803 881 - -
Rops1g01710 1505 SMART set_7 1350 1488 IPR001214 GO:0005515
Rops1g01710 1505 Pfam Zinc finger C2H2-type, 3 repeats 857 982 IPR040689 -
Rops1g01710 1505 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1505 - -
Rops1g01710 1505 ProSitePatterns Zinc finger C2H2 type domain signature. 960 981 IPR013087 -
Rops1g01710 1505 ProSitePatterns Zinc finger C2H2 type domain signature. 891 913 IPR013087 -
Rops1g01710 1505 ProSiteProfiles Zinc finger C2H2 type domain profile. 855 878 IPR013087 -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 14 66 - -
Rops1g01710 1505 ProSiteProfiles Zinc finger C2H2 type domain profile. 889 918 IPR013087 -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 408 428 - -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 40 58 - -
Rops1g01710 1505 ProSiteProfiles Post-SET domain profile. 1489 1505 IPR003616 -
Rops1g01710 1505 ProSiteProfiles Zinc finger C2H2 type domain profile. 958 986 IPR013087 -
Rops1g01710 1505 Pfam Pre-SET motif 1211 1342 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01710 1505 Gene3D SET domain 1188 1487 IPR046341 -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 922 952 - -
Rops1g01710 1505 MobiDBLite consensus disorder prediction 590 611 - -
Rops1g01710 1505 ProSiteProfiles Pre-SET domain profile. 1271 1347 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops1g01710 1505 Pfam SET domain 1361 1481 IPR001214 GO:0005515
Rops1g01710 1505 MobiDBLite consensus disorder prediction 597 611 - -
Rops1g01710 1505 ProSitePatterns Zinc finger C2H2 type domain signature. 823 844 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01710 Rops-Chr1 35890176 35903992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01710 135 1504 C2H2 Transcription Factor Family AT2G23740 51.659 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g01710 Pre-SET 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01710 - - gmx:100786757 2591.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01710 1 35890176 35903992 Rops1g01710 1 35890176 35903992 ECH