Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01707 ATGGGAATAGCAACAACAACACCACTTCCATCTATTCTCTCTCATCACTTGAAGACACAACATTTGGACAGGTCTGATTGTTCGAATTCTATGTCCCAAGATTATCAACAAGGAATCTTCAGTTTCTCGAATGGTTTCGAGAGATCAACGGTGACAACAACAACAACAGCACAGCAACAGATCCGAAGGGACAAGGTGAGGTTGCAAGGGTTCGAGGGAGCACCACCACCGGCATTAGTTGGAATAGAAGAAGAAGAAGAAACTGGAGGGATTCCGGTGTATGAAACCACAGGGATGTTGTCAGAGATGTTTAATTTCGCTCCCACCGCCGCTGAATTGTTGGAACAGCAACCCGTGACGGCGACGTTTCGGTCCTCAAGGCCACAAGCAGTGGCCAGTAATACTACTGCGGAGTGGTACGGTAATAGACAAGGGATGATGATTACTGGGTTGGGAGATGCAAAGAATCAGAATAGTCACCACAACCAGCATCATCAGATTTCAGATTCAGCTGCTGCCATGCAGCTTTTTCTCATGAACCCTTCTCAAACTAGATCACCTTCACCTCCTCCTTCTGCAACTGCAACTTCTTCAACACTCCACATGTTGCTTCCTAACCCTTCTTCTAATTCACTTCAAGGGTTCAACACTTTTGGTCAATTCACTTGGGTTCCTGAAGGAGGCACCACTGGCCCAGGCCATGGCCACCAGCCTGAGATTGGAGGTGTTGTGGAAGGTCAAGGTCTTTCTTTATCATTGTCTTCTTCATTGGAAGCAGCAAAAGCTGAGGAATTGAGGATGGGGGATAATGGTTTTCTGTATTACAATCAAGGAGGTGGAGGAGGCACCTCTTCTTCTTCAGCTCAATATCCGTACAAGAATAACCAGACATTGCATTTGCAAGGGGCTATTCAAGGATTTGGGTCATCCTTAGGTGCAGTGAATGTTATGAGAAATTCAAAGTATGTGAAAGCTGCTCAAGAATTGCTGCAAGAGTTTTGCAGTGTGGGGAGGGGTCAGTTTAAGAAGAGCAAGCAGAATTCAAACCCTAATTCAAATCCAGGTGCTTCTTCGTCTTCCTCAAAAGACCATCCTCCTCCTCCTTTGTCAGCTGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTTGACGAGGTGGATCGGAGATACAACCACTACTGTGAACAAATGCAAATGGTAGTGAATTCATTTGACCTGATGATGGGTTTTGGTGCAGCAGTTCCATACACAGCACTGGCGCAGAAAGCGATGTCTCGTCATTTCCGGTGTCTGAAGGATGCAATATCAGCACAGCTTAAGCACAGTTGTGAGCTGATAGGAGAGAAAGATGGGGCGGGGACCTCAGGTTTGACCAAGGGAGAGACCCCCAGGCTTAAGGTCCTAGAACAAAGCCTTCGACAGCAGAGGGCCTTCCACCAAATGGGAATGATGGAACAGGAAGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGATCTGTCAACGTTTTAAGAGCTTGGCTTTTTGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGTCACGACAGACTGGGCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTCCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTCAAAGAAGCAGAGTCTGCAGAAGAGAGAGAAAGGAACCAAAGCAATAGCAACAGTGGCTTAGCACAAACTCCAACCACACCAGCAGCTACAACATCAACAGCTACAGCGCCACCACCACCAACAATAACAACGACAACGACAACAAAACCAACAGGCAAAAGATCCGATATCAATGCTACTGAAAGCGACCCTTCACTCGTAGCAATCAATAGACAAGGCTTCTCGGAAAACCAAGCAAAACAATCTAGCACCACCACCACCATTATAGCCCCTAACATGGCCATCAACGCCACCGCCTCTGAGGTGGCGCCACCAGTGTCTCAATGTTTTGACTCAGACCTGCCACCACCACCACAGAGATCAATAATGACCACCGGTGACACGTGTCACAATGGCAGCTTGGTTGCAGCAGATTATGGGACCGCTTCTGCAAGTGCTGACATTGGATCCACACTGATTAGATTTGGGACCACCGCCGGTGACGTGTCACTCACCTTAGGGCTACGCCACGCAGGGAACATGCCCGAGAATACTTCTTTCTCTGTTAGAGACTTTGGAGGCATTTAG 2259 0.475 MGIATTTPLPSILSHHLKTQHLDRSDCSNSMSQDYQQGIFSFSNGFERSTVTTTTTAQQQIRRDKVRLQGFEGAPPPALVGIEEEEETGGIPVYETTGMLSEMFNFAPTAAELLEQQPVTATFRSSRPQAVASNTTAEWYGNRQGMMITGLGDAKNQNSHHNQHHQISDSAAAMQLFLMNPSQTRSPSPPPSATATSSTLHMLLPNPSSNSLQGFNTFGQFTWVPEGGTTGPGHGHQPEIGGVVEGQGLSLSLSSSLEAAKAEELRMGDNGFLYYNQGGGGGTSSSSAQYPYKNNQTLHLQGAIQGFGSSLGAVNVMRNSKYVKAAQELLQEFCSVGRGQFKKSKQNSNPNSNPGASSSSSKDHPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCELIGEKDGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNVLRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESAEERERNQSNSNSGLAQTPTTPAATTSTATAPPPPTITTTTTTKPTGKRSDINATESDPSLVAINRQGFSENQAKQSSTTTTIIAPNMAINATASEVAPPVSQCFDSDLPPPPQRSIMTTGDTCHNGSLVAADYGTASASADIGSTLIRFGTTAGDVSLTLGLRHAGNMPENTSFSVRDFGGI* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01707 752 MobiDBLite consensus disorder prediction 341 376 - -
Rops1g01707 752 Pfam Associated with HOX 316 441 IPR006563 -
Rops1g01707 752 SMART prehox3 311 442 IPR006563 -
Rops1g01707 752 CDD homeodomain 494 555 IPR001356 GO:0003677
Rops1g01707 752 Coils Coil 557 577 - -
Rops1g01707 752 Gene3D - 497 559 - -
Rops1g01707 752 SMART HOX_1 494 558 IPR001356 GO:0003677
Rops1g01707 752 MobiDBLite consensus disorder prediction 341 365 - -
Rops1g01707 752 ProSiteProfiles 'Homeobox' domain profile. 491 554 IPR001356 GO:0003677
Rops1g01707 752 FunFam BEL1-like homeodomain protein 4 497 559 - -
Rops1g01707 752 MobiDBLite consensus disorder prediction 564 628 - -
Rops1g01707 752 SUPERFAMILY Homeodomain-like 496 561 IPR009057 -
Rops1g01707 752 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 180 578 - -
Rops1g01707 752 MobiDBLite consensus disorder prediction 576 628 - -
Rops1g01707 752 Pfam Homeobox KN domain 511 550 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01707 Rops-Chr1 35839100 35846540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01707 1 541 Homeobox Transcription Factor Family AT4G36870 52.405 4.02e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops1g01707 POX 7.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01707 - - jre:108995343 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01707 1 35839100 35846540 Rops1g01707 1 35839100 35846540 ECH
Rops2g03418 2 62828563 62840382 Rops1g01707 1 35839100 35846540 ECH
Rops1g01707 1 35839100 35846540 Rops2g03418 2 62828563 62840382 PCT