Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01704 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCCAACCATAAAATTTCACGAGGACAATACCATGGCAAACATGGAGATAACAGAATTTGGGATAATCATCATAGTTCGATGGATGATTTGACTGATGTTGAAAAAGAAGACATTGACCGTGCAATTGCTCTCTCTCTTGCAGAAGAGGATCAGAAAGGAAAACAAGTTGTTGAGGATGAGTCTCAATCTGAAGAAGATGAACAACTCTGTAAACTTGATGAGGAGGAAGATGAACATCTCAGTAAAGTTCAACCAGAGGAAGATGAACATCTTGGTAAAGTTCAGCTAGATGAAGATGAATATCTTGCTAAAATTCAACAGCATGAAGATGAACGTCTTGCCAAAGATCGACTTGAGGAAGATGAGCAACTTGCCAGGGCAATTCAAGAAAGTTTGAACATTGATTTTCCTCCTCGATATGACAATGATTCTTTATTTCCATCTTTTCCCCACCTTTTTCCACCTGGATACAGAATCTGTGCTGGATGCAACACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGTGCCGTCTGGCATCCACAATGCTTCCGCTGCCATGCTTGCCATCGGCCAATCACTGATTATGAGTTTTCCATGTCTAGTAATCGCCCTTACCATAAATCCTGCTATAGGAAGAAGCATCATCCAAAATGTGATGTTTGCAAGGACTTTATCCCAACCAATTCAACTGGCCTCATAGAGTACAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGAGATACGGAATATCTTTTGCTTGATGATGGTCGAAAACTATGTCTAGAGTGTCTAGACTCAGCAATTATGGATACTCTTGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTCGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTATCAGAAGAGCAAACTGTCACCACCATTTCAAGGAGACCAAGGATAGGAGCAGGATACCGAGTCATGGACATGATAACTGAGCCTTATAGGCTTACCCGTCGCTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCCAGGTTGTTGACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACTTAAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGCTCTATTCTGGATCTGGGAATGATGGTGCATCATCTTCATCTTCATCCTCATCATCGCCATCCTCCTCTTCGGCATCATCAAAGAAGGGTAAACGATCTGACTTTGAAAAGAAACTTGGTGAGTTTTTCAAACACCAGATTGAGTCAGATACCTCGTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAATGCTTAAATATGGGCTCAAAAGGACCCTTGACCATATCCAAATGACCGGAAGTTTTCCATGTTGA 1617 0.4242 MGWFTKLLKGSNHKISRGQYHGKHGDNRIWDNHHSSMDDLTDVEKEDIDRAIALSLAEEDQKGKQVVEDESQSEEDEQLCKLDEEEDEHLSKVQPEEDEHLGKVQLDEDEYLAKIQQHEDERLAKDRLEEDEQLARAIQESLNIDFPPRYDNDSLFPSFPHLFPPGYRICAGCNTEIGQGRFLSCMGAVWHPQCFRCHACHRPITDYEFSMSSNRPYHKSCYRKKHHPKCDVCKDFIPTNSTGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTEYLLLDDGRKLCLECLDSAIMDTLECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVMDMITEPYRLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNDGASSSSSSSSSPSSSSASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIQMTGSFPC* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01704 538 MobiDBLite consensus disorder prediction 459 480 - -
Rops1g01704 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 195 - -
Rops1g01704 538 CDD LIM_DA1 170 222 - -
Rops1g01704 538 Gene3D Cysteine Rich Protein 167 228 - -
Rops1g01704 538 Pfam Protein DA1 319 533 IPR022087 -
Rops1g01704 538 FunFam Protein DA1-related 1 164 223 - -
Rops1g01704 538 Pfam LIM domain 170 225 IPR001781 -
Rops1g01704 538 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 129 142 IPR003903 -
Rops1g01704 538 ProSiteProfiles LIM domain profile. 168 228 IPR001781 -
Rops1g01704 538 PANTHER PROTEIN DA1-RELATED 2 3 537 IPR045218 -
Rops1g01704 538 MobiDBLite consensus disorder prediction 459 484 - -
Rops1g01704 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 251 - -
Rops1g01704 538 ProSitePatterns LIM zinc-binding domain signature. 170 204 IPR001781 -
Rops1g01704 538 SMART uim 43 62 IPR003903 -
Rops1g01704 538 SMART uim 129 148 IPR003903 -
Rops1g01704 538 SMART lim_4 169 221 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01704 Rops-Chr1 35752169 35758516 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops1g01704 DA1-like 2.9e-107 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01704 - - gmx:100817969 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01704 1 35752169 35758516 Rops1g01704 1 35752169 35758516 ECH
Rops2g03417 2 62770207 62776568 Rops1g01704 1 35752169 35758516 ECH
Rops1g01704 1 35752169 35758516 Rops2g03417 2 62770207 62776568 PCT