Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01700 ATGCATCTCTTTCCCTTCATCTCTGTCTTCATTTTCACCCTATTGATCAGCAACTTCTCTATCATTCTGGGACAGCAACCTTATATTGGTTTAGCCACAAATGCATGCCCTCGAAAGGGTAACTCAAAATCTATCCGTGGTTACACTTGTAATGGTGCAAATCACAGTTGCCAAGCTTACCTTACCTTCAGATCTCAACCCATTTACAGTTCTGTTTCCACAATATCAGCTTTGTTGGGTTCTGACCCATCCCAGCTTGCTGAAATAAACTCAGTTTCCCTGAATGACACCTTTGAATCAAACAAGTTGGTGATTGTTCCTGTCAAGTGCTCCTGTGCAGGTGAGTATTATCAAGCAAACACATCCTATGTATTCCAGAATACAGACACCTACTTTTTGATTGCCAACAACACTTTTGAGGGTCTCTCAACTTGTCAAGCTTTGATGCGTGAAAACCACAATCCTAGAGATATATACCCTGGTAGAGAACTCACAGTTCCTCTTAGATGTGCTTGTCCCACAAAGAATCAAACTGAGAAAGGTGTCAGGTACCTCTTGAGTTACCTTGTAAACTGGGGTGATTCTGTTTCACTTGTTAGTGAGAGATTTGGTGTCAGAGCCAACACCACTCTTGAAGCTAATACCCTTACTATGACAAAAGCCATCATCTATCCCTTTACCACACTTCTAGTGCCACTTCATGATAAACCTTCAAGTTCTCAAACCCTTTCGCCAGCTAGACCATCTCCCTCATCCTCACCTTCATCTTCTTCCACAAATCAAAGATCAAGCAAAACTTGGGTGTATGTAATTGTTGGAGTAGTTGTTGGAGTTATCGCCTTAATATTAGTTCTCTGTGCTGTCATTTTCTTCACATGTTATCACAAGGGTAAAAAGAAAGATGATTCGGTGATTGTGTCCAAGAGTTTTGAGGCTATTGAGAAACCACAAGGGAAGGAAATTGAGAAAGAAGATGGAAAAAACTTGTCAGAGATCATATCTGGAATAGCTCAATCATTCAAAGTGTATGGTTTTGAGGAACTACAGCGTGCAACAGATAATTTTAGTCCAAGTTGTTGGATTAAAGGATCTGTTTACCGTGGTGTTATTAAAGGTGATTTGGGTGCAATTAAGAAGAAAGAAGGTGATGTGTCAAAAGAGATACAAATACTGAACAAAGCCAACCATTCTAATATTATACGCCTCTCTGGGGTCAGCTTCAATGAGGGTCATTGGTACCTTGTTTATGAGTATGCCGCTAATGGAGCCTTGTGCGATTGGATCTACTTCAACAACGTGGATGGGAAGTTTTTGAATTGGAAGCAAAGAATACAGATTGCATTGGATGTAGCCACAGGAGTTGACCATCTTCATAGTTTCACTTCTCCTCCTCATATCCATAAAGATCTAAAGATAAGTAACATTCTTTTGGACAATGATTTCAGGGCAAAGGTTGCAAACTTAAGCCTTGCAAGGTCCATGGAAGGAGTGGATGAGCAATTTCTTGCAACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTATTGTATCTACAAAGCTTGATGTTTATGCATTTGGGGTGTTGATGTTGGAAATCCTCACTGGAAAAGAGGTTGCTGCTATGTTAGATGAAGATAATAAGAATTTGTCAAATGTTTTAAGTGCCATACTTGATGAGGAAAGTGGCAAAGAGAGGTTGAAGGAGTTTATGGATCCTTCTCTGCAAGAAAATTATCCATTAAAACTTGCTATGTTTATGGTTGAAATGAGTGATAATTGTATAAAGAAAGATCCAGCAAGTCGCCCTGCCATGAATGAGATTGTAACATCTCTGTCCAAAACCCTGAACTCTACATTGAGTTGGGAAAATTCAGTGAACGTTTCAGGATACCACTGTTTTAGCAACATTTCTTGA 1938 0.3973 MHLFPFISVFIFTLLISNFSIILGQQPYIGLATNACPRKGNSKSIRGYTCNGANHSCQAYLTFRSQPIYSSVSTISALLGSDPSQLAEINSVSLNDTFESNKLVIVPVKCSCAGEYYQANTSYVFQNTDTYFLIANNTFEGLSTCQALMRENHNPRDIYPGRELTVPLRCACPTKNQTEKGVRYLLSYLVNWGDSVSLVSERFGVRANTTLEANTLTMTKAIIYPFTTLLVPLHDKPSSSQTLSPARPSPSSSPSSSSTNQRSSKTWVYVIVGVVVGVIALILVLCAVIFFTCYHKGKKKDDSVIVSKSFEAIEKPQGKEIEKEDGKNLSEIISGIAQSFKVYGFEELQRATDNFSPSCWIKGSVYRGVIKGDLGAIKKKEGDVSKEIQILNKANHSNIIRLSGVSFNEGHWYLVYEYAANGALCDWIYFNNVDGKFLNWKQRIQIALDVATGVDHLHSFTSPPHIHKDLKISNILLDNDFRAKVANLSLARSMEGVDEQFLATRHIVGTRGYMAPEYLENGIVSTKLDVYAFGVLMLEILTGKEVAAMLDEDNKNLSNVLSAILDEESGKERLKEFMDPSLQENYPLKLAMFMVEMSDNCIKKDPASRPAMNEIVTSLSKTLNSTLSWENSVNVSGYHCFSNIS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01700 645 ProSiteProfiles Protein kinase domain profile. 299 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01700 645 SUPERFAMILY Protein kinase-like (PK-like) 338 619 IPR011009 -
Rops1g01700 645 Pfam LysM domain 188 232 IPR018392 -
Rops1g01700 645 Gene3D Transferase(Phosphotransferase) domain 1 420 636 - -
Rops1g01700 645 SMART serkin_6 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01700 645 Gene3D Phosphorylase Kinase; domain 1 320 418 - -
Rops1g01700 645 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 632 - -
Rops1g01700 645 MobiDBLite consensus disorder prediction 237 261 - -
Rops1g01700 645 FunFam PTI1-like tyrosine-protein kinase 3 419 633 - -
Rops1g01700 645 SMART LysM_2 187 232 IPR018392 -
Rops1g01700 645 SMART LysM_2 122 167 IPR018392 -
Rops1g01700 645 Pfam Protein kinase domain 378 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01700 Rops-Chr1 35713765 35715860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01700 1 632 Receptor kinase-like Gene Family AT2G23770 43.789 1.81e-169 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops1g01700 Pkinase 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01700 - - gmx:100815842 943.34