Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01699 ATGGCCTATCAGGGTACCAATAGCATCCTTTGGCGCTTTGTTTTGGCTGTTGTGATTGCCACCCTTTTCCCTCCTAACCTTAGTTCTGCCAAGCAATCCAAGATAATTGGCATGAAAATGAATGTGATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCCACTTGTTCTGTGGGCTATGCTGGCAAGATGACAAATAACATTGGTAAGGACCTCATCCATTATGAAGTTACTGACCCCAGTGATGACCCCATAAACCCTAAACCTGGAACTTTGAGGTATGGAGCTTCAGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAGACTCGTGAAGCCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGCGCCACCATCAACATTGCTGATAATGCATGCTTGATGATCTATAAGGCTACTAACGTAATCATCCATGGCATTCGGATTCATCATTGCAAAGCTCAAGCCCCTGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCCTTTGGGCCAAGTAGATGGAGATGCAATCAGATTGGTCACAGCTTCAAAAATCTGGATTGATCATAATACGCTTTATGATTGCCAAGATGGTCTTCTTGATGTCACGCGGGGTTCCACTGATGTGACTGTATCCAACAACTGGTTCAGAGAACAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTGAGAGACCAGAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGTTATGCACATGTAGCCAACAATCTTTACATGGGATGGATGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTTAAAAGTGAAGCTAACCTCTTCATCGCACCTACAGCTGGGAGAAAGGAGGTAACATGGAGAAAAGGTGATAATAAAAATGAGGATAGATGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCCTCCTTCGCGGTAACAAAAGGAGGACGTGTACCAAAGCCGAATTATAGCAAGGAACAAGGTTTTAAAGTTGCTGATGCCAAATCTGTGAGATCATTGACAAGATCTTCAGGCGCATTACGATGCAGTAAAACCTCTATATGCTGA 1176 0.4413 MAYQGTNSILWRFVLAVVIATLFPPNLSSAKQSKIIGMKMNVIDRCWRLNPEWRRHRPQLATCSVGYAGKMTNNIGKDLIHYEVTDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIRLVKPLLISSFTTIDGRGATINIADNACLMIYKATNVIIHGIRIHHCKAQAPGMVMGPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFREQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYMGWMQYAIGGSMGPSLKSEANLFIAPTAGRKEVTWRKGDNKNEDRWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEQGFKVADAKSVRSLTRSSGALRCSKTSIC* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01699 391 PANTHER PECTATE LYASE 18-RELATED 37 387 IPR045032 GO:0030570
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Rops1g01699 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Rops1g01699 391 SUPERFAMILY Pectin lyase-like 62 385 IPR011050 -
Rops1g01699 391 Gene3D - 40 384 IPR012334 -
Rops1g01699 391 SMART amb_all 117 314 IPR002022 -
Rops1g01699 391 Pfam Pectate lyase 128 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01699 Rops-Chr1 35684719 35686219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01699 71 323 Polysaccharide Lyase AT5G09280 72.727 2.36e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01699 K01728 - gmx:100780437 706.057