Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01683 ATGAACCATCGACCTATCCAAGACCACATGATGCTCATCTCTCAGTTATACCCTGCTGGTGCATACACTCAAATAATTACTCAACAAGGGGAGAAGAAGCCAAGACGCCGTCGTAATAAGAAGAGCAAAGGAGGAGAAAACGGGGCATCTGACGCCAACAAGAAGAGGAAGCTCAGTGAAGAGCAAGTTAATCTACTTGAGCAAAACTTTGGAAATGAGCATAAACTTGAGTCCGAAAGAAAGGACAGGCTCGCAATGGAGCTTGGTTTGGATCCTCGACAAGTTGCTGTTTGGTTTCAAAACAGAAGAGCTAGGTGGAAGAACAAAAAATTGGAAGAAGAGTACTCAAATCTTAAAAAAACCCATGAAACCAACTTGCTCGATAAATGTCGCCTGGAAAGTGAGGTGTTGAAGCTCAAAGAGCAACTATTGGAGGCTGAGAAGGAGATTCAAAGGCTGCTAGAACGTGCTGATATAGTCCCAAGCAACAGCTCCAGTTCATCACAGTCACAATCAATGGAAGCAGTGGACCCACCATTTCTTGGAGAATTTGGAGTTGAAGGATATGATGATGATGTGTTTTACGTGCCTGAGGCCCATTACATCAATGGCATGGAATGGATTAATCAATTCATGTAA 639 0.4319 MNHRPIQDHMMLISQLYPAGAYTQIITQQGEKKPRRRRNKKSKGGENGASDANKKRKLSEEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKTHETNLLDKCRLESEVLKLKEQLLEAEKEIQRLLERADIVPSNSSSSSQSQSMEAVDPPFLGEFGVEGYDDDVFYVPEAHYINGMEWINQFM* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01683 212 Coils Coil 101 121 - -
Rops1g01683 212 MobiDBLite consensus disorder prediction 27 59 - -
Rops1g01683 212 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Rops1g01683 212 SMART HOX_1 52 113 IPR001356 GO:0003677
Rops1g01683 212 Coils Coil 49 69 - -
Rops1g01683 212 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Rops1g01683 212 Coils Coil 136 156 - -
Rops1g01683 212 CDD homeodomain 54 110 IPR001356 GO:0003677
Rops1g01683 212 Gene3D - 45 118 - -
Rops1g01683 212 MobiDBLite consensus disorder prediction 43 59 - -
Rops1g01683 212 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Rops1g01683 212 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Rops1g01683 212 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Rops1g01683 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 169 IPR045224 GO:0003700
Rops1g01683 212 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Rops1g01683 212 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01683 Rops-Chr1 35460629 35462644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01683 1 212 Homeobox Transcription Factor Family AT2G18550 55.804 2.44e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops1g01683 Homeodomain 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01683 K09338 - gmx:100809616 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01683 1 35460629 35462644 Rops1g01683 1 35460629 35462644 ECH
Rops1g01683 1 35460629 35462644 Rops2g03389 2 62396530 62398152 PCT