Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01679 ATGAGAGTTCCCGTTTCATCATCCCCAAACGCAATCAGTACCATTGCCCTCAACAACAACACAGGCCCGTGTTACGAGCCCACTTCCGTCCTCGACCTCTGCCGGAGCCCAAGCCCCGGCAGCGTCCCCGAAAAGGCCACTGATAACTCCGTTGTCGTTAACTCCCAAGACCAAGAGTGTCTTGAGCTGGACGACCATGCGTTGCATAATTTGGATTGGGATTCCATCATGATGGACTTGGGGTTGCACGACGACTCAGTTTTGAAGACTAGTAACAATCCATGCGACCTCCCTCTTCCTCTCTCTGAATTACCAACACCCTTTGATCACGCTGCAGAATTCGCGACTCTCTCTGACATGTACTCCAACCATAACCTGGGAGGTTACAGTTACAGTTACAGTGACAGTTACAACACCAACACCATCCCAGACAACAACAATATGGATTTCATTGAAGACCTTATCAGTGCTGCTGATTGCTTTGACAGCAATCAGTTACAACTGGCGGAGGTGATATTGGAGCGACTCAATCAACGGCTACGATCTCCTATCGGAAAACCTCTTCAAAGAGCAGCGTTTTACTTCAAGGAAGCTCTGCAGTCCCTTCTCTCAGATTCGAATAAGACGCTAAGGCTTTCATCTTTGGTGGAAATTGTGCATGGCATTAGAACCTTCAAGGCGTTCTCTGGAATCTCTCCTATCCCAATGTTCTCTATCTTCACCACCAACCAAACACTACTTGAAGCCCTTCACGTTCATGCCTCCTCCTCTTTCATCCATGTTATCGATTTTGATATCGGCATGGGAATTCAATATGCTTCTCTCATGAAGGAGCTTGCGGAGAAGGCAGAGTCCTGCAAAATCGCCACCGTTCTCCTCCGAATCACGGCCGTCGTTCCAGAAGAGTACGCTGTCGAGAGCACGCTCATCCGCGAAAACCTCACTCAGTTCGCTAATGAACTCAGAATCCGAGTCCAGGTCGAGTTTGTTCTGCTAAGAACCTTCGAGACGCTCTCCTTTAAGGCTGTGAAGTTAGTCGACGGAGAGAAAACCGCCGTGCTCTTGTCTCCGGCGATCTTCCGCCGCCTCGTTTCCGTTGCGGCTTTTCTGGCGGACGTACGGAGTGTCTCCCCCTGTGTGGTGGTTTTCGTGGACGGCGAAGGGTGGACGGAAGCGGCGGCGGCGTCGACTTTCAGTCGCGGCGTGGTGAGCAGCCTGGAGTTCTACACGATGATGATGGAGTCGCTGGATGTGTCGGTGGTGGGGGGAGGAGGAGGAGGGGAATGGGTGAGGAGAATTGAGATGCTGCATCTACGGCCGAAGATATTGGCGGCGGTGGAAGGTGCAGGACGGCGGATGCCTCCGTGGAGGGAGGCGTTTTACGGTGCCGGTATGAGGCCGGTTCAGTTAAGTCAGTTCGCCGATTTTCAAGCGGAGTGTTTGTTGGCAAAGTCACAAATCAGGGGCTTCCACGTGGCAAAACGACAGGCTGAGCTGGTGCTCTTCTGGCATGAGCGGGCCATGGTTGCCACGTCAGCTTGGCGCTGTTAG 1551 0.5248 MRVPVSSSPNAISTIALNNNTGPCYEPTSVLDLCRSPSPGSVPEKATDNSVVVNSQDQECLELDDHALHNLDWDSIMMDLGLHDDSVLKTSNNPCDLPLPLSELPTPFDHAAEFATLSDMYSNHNLGGYSYSYSDSYNTNTIPDNNNMDFIEDLISAADCFDSNQLQLAEVILERLNQRLRSPIGKPLQRAAFYFKEALQSLLSDSNKTLRLSSLVEIVHGIRTFKAFSGISPIPMFSIFTTNQTLLEALHVHASSSFIHVIDFDIGMGIQYASLMKELAEKAESCKIATVLLRITAVVPEEYAVESTLIRENLTQFANELRIRVQVEFVLLRTFETLSFKAVKLVDGEKTAVLLSPAIFRRLVSVAAFLADVRSVSPCVVVFVDGEGWTEAAAASTFSRGVVSSLEFYTMMMESLDVSVVGGGGGGEWVRRIEMLHLRPKILAAVEGAGRRMPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQAELVLFWHERAMVATSAWRC* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01679 516 ProSiteProfiles GRAS family profile. 141 515 IPR005202 -
Rops1g01679 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 149 510 IPR005202 -
Rops1g01679 516 Pfam GRAS domain family 151 515 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01679 Rops-Chr1 35412044 35414116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01679 39 515 GRAS Transcription Factor Family AT4G36710 55.444 1.58e-169 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops1g01679 GRAS 8.2e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01679 - - gmx:100807470 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01679 1 35412044 35414116 Rops1g01679 1 35412044 35414116 ECH
Rops1g01679 1 35412044 35414116 Rops2g03387 2 62340589 62342635 PCT