Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01676 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCTCCTCCAAAGTCTACCACCAAGAAGAAGAGAAACCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTTTGTCTCCGAAGACCCTTATGGCCACAAACCGATTTGTGTGTGAAATATGCAACAAGGGGTTTCAAAGGGATCAGAATCTTCAGCTTCATCGAAGGGGTCACAATCTGCCATGGAAGCTTAGGCAGAGGTCAAGCAAAGAGGTGAGGAAAAGGGTTTACGTTTGTCCAGAGTCAACTTGTGTTCATCACGATCCTTCTAGAGCCTTGGGGGATCTCACAGGGATAAAGAAGCACTTCTGCAGAAAACACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGTACCAGGGAGTATAAATGCGATTGTGGCACTTTGTTTTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCAGACTCAGCCTGCTGCAAAGGCTAGTTCAGAGTCAGATTCCAAAGCTGTAACGGGCGATTCATCACCTGCGGCGGCGCCACCACCACTGCCGCAGCCGCCTCCAGCTCCAGCGCCACCAACTACTTCTCAGTCAAACAGTGTCTTGCCATCTGCTGTGCAGACACAAAATCCAGAGTTGCCAGAAAATTCCCTACGAATCATAGAGGAACCACCGGCCAATACTGCTACCAATGGGAGCAGTAGCAGCAGCCCCAGCTCAACTAGCAATAGCAATGGTGGTACTACCAGTAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACAGCATCAGGAGGAAGCCTCCAATCTCAAACACCAGCATTCACTGATCTAATTAGGGCCATGGGGCGCCCTGCCGACCTCCCAGGGCCTTCATCTTCCGACTCCATTTCTCTGTGCCTAGCCACTAATCAAGGGTCATCCATTTTTGGAACAGGAGGGCAGGAGCGCCGGCAATATGCCCCACCACCACAGCCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCGACAAATGCCTCTTTGCTTCGAGGCTTAGGCATAGTGTCATCATCTGCTTCATCCTCACCAGGTCAACAAGACAATTTGCAATGGGGTCAGCGGCCGGTGGAACCAGAGAGTGCCTCAGTTCCTGCAGGGCTTGGACTTGGACTTCCCTGTGATGGTGGCTCTGGACTGAAGGAGTTGATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTTGGGTTGGGGATGGCTGCTGGGGGCACCCCTGGGGGAGGCTTATCAGCACTCATCACATCTATTGGTGGTGGTCTGGATGTTACTGCGGCGGCTGCGGCATCCTTTGGTAATGGAGAGTTCCCTGGCAAAGATATTGGGAGGAACACTTGA 1542 0.511 MPVDLDNVSTASGEASVSSSGNQTVPPPKSTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQPAAKASSESDSKAVTGDSSPAAAPPPLPQPPPAPAPPTTSQSNSVLPSAVQTQNPELPENSLRIIEEPPANTATNGSSSSSPSSTSNSNGGTTSSSVFASLFASSTASGGSLQSQTPAFTDLIRAMGRPADLPGPSSSDSISLCLATNQGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASSSPGQQDNLQWGQRPVEPESASVPAGLGLGLPCDGGSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAAASFGNGEFPGKDIGRNT* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01676 513 MobiDBLite consensus disorder prediction 400 429 - -
Rops1g01676 513 Gene3D Classic Zinc Finger 116 196 - -
Rops1g01676 513 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Rops1g01676 513 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Rops1g01676 513 MobiDBLite consensus disorder prediction 400 419 - -
Rops1g01676 513 FunFam protein indeterminate-domain 12-like 41 109 - -
Rops1g01676 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 471 IPR031140 -
Rops1g01676 513 MobiDBLite consensus disorder prediction 193 256 - -
Rops1g01676 513 Gene3D Classic Zinc Finger 42 112 - -
Rops1g01676 513 MobiDBLite consensus disorder prediction 193 215 - -
Rops1g01676 513 MobiDBLite consensus disorder prediction 1 45 - -
Rops1g01676 513 MobiDBLite consensus disorder prediction 238 256 - -
Rops1g01676 513 MobiDBLite consensus disorder prediction 268 292 - -
Rops1g01676 513 MobiDBLite consensus disorder prediction 9 31 - -
Rops1g01676 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Rops1g01676 513 SMART c2h2final6 62 84 IPR013087 -
Rops1g01676 513 SMART c2h2final6 138 158 IPR013087 -
Rops1g01676 513 SMART c2h2final6 103 133 IPR013087 -
Rops1g01676 513 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Rops1g01676 513 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01676 Rops-Chr1 35382652 35386092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01676 1 513 IDZ Gene Family AT5G66730 60.561 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops1g01676 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01676 K25869 - gmx:100806404 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01676 1 35382652 35386092 Rops1g01676 1 35382652 35386092 ECH
Rops2g03384 2 62292986 62295927 Rops1g01676 1 35382652 35386092 ECH
Rops1g01676 1 35382652 35386092 Rops2g03384 2 62292986 62295927 PCT