Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01658 ATGGGTGACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCGCCAAAGCCCAGAACCGCGCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACTGGTCTCACAGCGAACCTCTTGAAACTCTTTGAGCCTCGTCCTCCTTTGGAATATAAACCCCCTCCAGAGAAAAGGAAATGTCCACCATTAACAGGGATGGCACAATTTGTGAGTAATTTTGCCGAGCCTGCCGATCCCGAATATGCTCCACCTGTTCAAAAGGGAGAAACTCCTACACAAAAGAGAGCCAGAATACACAAGCTAAGACTAGAGATGGGAGCAGCAAAGGCTGTTGAGGAGCTAGAGAAATATGATCCAAATAATGACCCAAATGTATCTGGAGATCCATACAAGACATTGTTTGTGGCCAGGCTCAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGTGACAAATAAGCCCAAGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAACTGCTTATAAACAAGCTGATGGTAGGAAAATTGACGGTAGAAGGGTGCTGGTGGATGTCGAGCGTGGAAGGACTGTTCCGAATTGGAGACCTCGCCGCCTAGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAGAGACATTCTGGGAGGGAGCAACAGCCATCTCGTTCTGAAGAACCAAGAGTGCGGGAGGATCGACATGATGATCGGGACAGAGAGGCATCACGTGAAAGAGGTAGAGACAAAGATAGAGAACGAGAGAAATCACGCGAACATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGGCACCCCAGAGACAGAGATAGGACTAGGGACAGAGACAGAGACAGGGAAAGGGATAGAGATCGTGGACGTGATCGAGATAAAGCACGTGATCGGGATCGTGAGCGAGAGAGGGACCGTGATCGGCATCGAGAGCATGCTCGTCATCGTGAAAGGGATAGAAATTATGAAGTTGATCGAGGTCGCTCACATGATAGGGAGTTTGATTATGACCGTGTTGAATCAAAACACGAGAGGGACCGACATGGTGAAAGGGATCGTGACCATGGGCATGCAGATCCTGATCATGACCCTGAGCAGGATGACCACTATGAGCATCACGGAGGTGACCATGGTGACCATTACAATCAATATCCTGATCATGATAGGATGGAAGATGACTACCACACAGGGCGTGCAACATCTGAATCGCGTGAAAAGGAGAGAAATCGTGATATGGACCATGAATATCATCGCTCAGATAGATCTCATTCTCGGGAGTATGATTACTAA 1398 0.4793 MGDNDAFMRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSNFAEPADPEYAPPVQKGETPTQKRARIHKLRLEMGAAKAVEELEKYDPNNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVADKVTNKPKGYAFIEYLHTRDMKTAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQPSRSEEPRVREDRHDDRDREASRERGRDKDREREKSREHSHERVRDRDYREDRHPRDRDRTRDRDRDRERDRDRGRDRDKARDRDRERERDRDRHREHARHRERDRNYEVDRGRSHDREFDYDRVESKHERDRHGERDRDHGHADPDHDPEQDDHYEHHGGDHGDHYNQYPDHDRMEDDYHTGRATSESREKERNRDMDHEYHRSDRSHSREYDY* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01658 465 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 58 323 - -
Rops1g01658 465 FunFam U1 small nuclear ribonucleoprotein 70 kDa 124 249 - -
Rops1g01658 465 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 40 128 IPR022023 -
Rops1g01658 465 SMART rrm1_1 138 211 IPR000504 GO:0003723
Rops1g01658 465 MobiDBLite consensus disorder prediction 219 465 - -
Rops1g01658 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Rops1g01658 465 Gene3D - 124 249 IPR012677 -
Rops1g01658 465 CDD RRM_snRNP70 136 226 IPR034143 GO:0030619
Rops1g01658 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Rops1g01658 465 SUPERFAMILY RNA-binding domain, RBD 125 237 IPR035979 GO:0003676
Rops1g01658 465 MobiDBLite consensus disorder prediction 240 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01658 Rops-Chr1 35063192 35067753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01658 139 185 C2H2 Transcription Factor Family AT2G19380 40.426 2.56e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01658 1 35063192 35067753 Rops1g01658 1 35063192 35067753 ECH