Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01656 ATGAATGTCATGAATCTGCTTCTTGTGAAATATGTGAAGACTGAAAGTTTCTCTGAACTCAACTCTTCAAAAACATACAGTCTTTCATTTTCCCCCTTTTGCCCCTTTCGTCCTTCACCCTTTTCTCTGCTAGGGTTTCAAATGGAGACGAAGAACAAAGTGAAGAACGAGGATCCTGCAGTAGAGTCTCCGACTTCGGTCCTAGAAGATGAGGATGCTTGCGACATGAACGGTGAAGTTAAGTCGGAGGAAGAGGCGCTTGTAGATGTTAAAGATGCGGGGTCTTCCTTGATATCGAAATCATTTATAGAGGAGGAAGAGAAGTTGCTCAAAGCTCGGATCAAGGAAGAGGAGGCACCATGCGAGGAGGCACCTGATCTCAATGACACACAGTTTAACAAGTTGGATGAGCTTTTAACGCAAACCAAACTGTACTCTGAGTTTCTTCTGGAGAAAATGGATGACATCACACTTACCGGAGGTGAACAAGAGAATGGGGGTGAGGAAGAGAGCAATCCACCTGCAAAGAAGAAGGGCCGTGGATCAAAAAGAAAAGCTTCACAGTATAACACAAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAAGACTGAAGATATGAGCATGAGTGAGGAAGAAAGAATTGAGAAAGAGCAGAAGGAGCTTATGCCTTTACTGACTGGTGGGAAATTGAAGTCTTATCAACTGAAGGGTGTAAAATGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAGATGGGTCTTGGGAAGACAATCCAAACGATTGGGTTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATAGCCCCTCTGTCTACCCTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTCCCTGCTATTATCTACCACGGTGACAGGAAACGGAGAAATGAAATCCGGAGTAAACATATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTAATAACTTCCTATGAAGTTGCTTTAAATGACGCTAGGAAATGTTTCAGTTCATACCACTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGGCATTGAAATACATAAAAGTGGAAAATAAGCTTCTTCTAACTGGGACTCCTCTTCAGAATAACTTGGCAGAGCTATGGTCATTGTTAAACTTCATTTTACCTGATATCTTCTCATCCCTGGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCATTAATGGAGCTTCCAAGGAGGAATTGGAAGAGAAAAGAAGGGCCCAAGTAGTAGCAAAGCTTCATGCGATTCTTCGGCCCTTTCTTTTGCGTAGGATGAAGGCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTTCAGGATCATTTAATTAATGCGACGTTGGAAAAATATTTAAAAGAAAAATCATCACTTGGAGGTGCTACAAGAAAGCTTAATAATCTGGTCATTCAACTTAGGAAGGTCTGTAACCATCCTGACCTCCTAGAATCAGCTTTTGATGGTTCATATTTTTATCCTCCTTTAAATGAGATAATTGAACAATGTGGAAAATTCCATTTGCTTGACCGATTGTTGGAACATTTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACCAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCTTGGAAGTTTGCAGGATTGATGGTAGCGTGAAACTGGATGAAAGGAAACGGCAGATCCAAGAGTTCAATGATCCAAACAGCAACTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGTCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCTCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTTATTGAGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGCCAGTATGGATGAAATGGAGGAAGAGGATGTTTTGGCGATTCTTCTAGGAGAAGAAGAAACAGCCGAAGACAAAATGATACAAACAGATATTAGTGATGAAGACCTGGAGAGGCTCTTAGATCGCAGTGATCTCATTGTCGATGGCTCAAAAGATGATAAAGCTCCAGGAAGTACGTTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCTACTGGGGGCATGCTTTCTACCCTTAACAGCTAA 2418 0.4152 MNVMNLLLVKYVKTESFSELNSSKTYSLSFSPFCPFRPSPFSLLGFQMETKNKVKNEDPAVESPTSVLEDEDACDMNGEVKSEEEALVDVKDAGSSLISKSFIEEEEKLLKARIKEEEAPCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLTGGEQENGGEEESNPPAKKKGRGSKRKASQYNTRKAKRAVAAMLTRSKESEKTEDMSMSEEERIEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGDRKRRNEIRSKHMPRTIGPKFPIVITSYEVALNDARKCFSSYHWKYLVVDEGHRLKNSKCKLVKALKYIKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCINGASKEELEEKRRAQVVAKLHAILRPFLLRRMKADVELMLPRKKEIIIYANMTEHQKNFQDHLINATLEKYLKEKSSLGGATRKLNNLVIQLRKVCNHPDLLESAFDGSYFYPPLNEIIEQCGKFHLLDRLLEHLFARNHKVLIFSQWTKVLDIMDYYFSEKGLEVCRIDGSVKLDERKRQIQEFNDPNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERAKPASMDEMEEEDVLAILLGEEETAEDKMIQTDISDEDLERLLDRSDLIVDGSKDDKAPGSTFPLKGPGWEVVIPTATGGMLSTLNS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01656 805 Gene3D - 474 773 IPR027417 -
Rops1g01656 805 FunFam ATP-dependent DNA helicase DDM1 232 477 - -
Rops1g01656 805 SMART helicmild6 590 674 IPR001650 -
Rops1g01656 805 Pfam SNF2-related domain 241 538 IPR000330 GO:0005524|GO:0140658
Rops1g01656 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 758 IPR027417 -
Rops1g01656 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 468 IPR027417 -
Rops1g01656 805 Gene3D - 239 469 IPR038718 -
Rops1g01656 805 PANTHER SNF2/RAD54 HELICASE FAMILY 80 764 - -
Rops1g01656 805 FunFam Chromatin complex subunit A 106 478 705 - -
Rops1g01656 805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 720 IPR001650 -
Rops1g01656 805 SMART ultradead3 234 429 IPR014001 -
Rops1g01656 805 Coils Coil 208 228 - -
Rops1g01656 805 MobiDBLite consensus disorder prediction 159 195 - -
Rops1g01656 805 CDD SF2_C_SNF 550 684 - -
Rops1g01656 805 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 250 418 IPR014001 -
Rops1g01656 805 Pfam Helicase conserved C-terminal domain 564 674 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01656 Rops-Chr1 35037491 35044642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01656 224 695 RAD5 or RAD16-like Gene Family AT3G16600 23.875 6.41e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g01656 SNF2_N 1.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01656 K19001 - gmx:100777687 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01656 1 35037491 35044642 Rops1g01656 1 35037491 35044642 ECH