Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01646 ATGCTATTCTCCATGCCCAACCACAAACCCTATGATGAATCAGACATGTATTCTTTCACTCCTTCTTCTTCTTCTGTGGACTGCACTCTCTCCCTTGGAACCCCATCCACCCGTTTCACCGAAGATGAAGAGAAACGAAGCCGCCATGAACGTCGCTCCGTCTCAAACTTTTGTTGGGATTTACTACAACCCAAACAAAGCCCTCATTCCCAAACCAAGTCCACTAGAGGAACCAGCAATAACACCGACGACCCTCTCCTAGCTCGCCGTTGTGCCAACTGTGACACCACTTCAACACCCCTTTGGAGGAATGGCCCTCGAGGCCCAAAGTCACTGTGCAATGCGTGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCCGCCGCCACACCCGCGGTGGATTCCGGCGGCGTAATGGAATCGTCGCAGATGTATAGCCACCATAACAACAACTCATGGTACGCACAACCGCAGAGTCAGAAGATTCAGTGTTTCTCGCCGGCGATGGGGAACGAATTCAGGTTCGTGGATGACGCCGATGGAGACTCCGAGAACGGCATTCCGTTTCTCTCTTGGAGACTCAACGTCACAGACAGAACGAGCCTCGTTCACGACTTTACCAGATGA 636 0.5189 MLFSMPNHKPYDESDMYSFTPSSSSVDCTLSLGTPSTRFTEDEEKRSRHERRSVSNFCWDLLQPKQSPHSQTKSTRGTSNNTDDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPAVDSGGVMESSQMYSHHNNNSWYAQPQSQKIQCFSPAMGNEFRFVDDADGDSENGIPFLSWRLNVTDRTSLVHDFTR* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01646 211 Gene3D - 87 164 IPR013088 GO:0006355|GO:0008270
Rops1g01646 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 88 129 - -
Rops1g01646 211 ProSitePatterns GATA-type zinc finger domain. 91 116 IPR000679 GO:0006355|GO:0043565
Rops1g01646 211 Pfam GATA zinc finger 91 125 IPR000679 GO:0006355|GO:0043565
Rops1g01646 211 MobiDBLite consensus disorder prediction 64 86 - -
Rops1g01646 211 MobiDBLite consensus disorder prediction 26 48 - -
Rops1g01646 211 CDD ZnF_GATA 90 122 IPR000679 GO:0006355|GO:0043565
Rops1g01646 211 PANTHER GATA TRANSCRIPTION FACTOR 18 1 211 IPR044272 GO:0003700|GO:0009908
Rops1g01646 211 SMART GATA_3 85 139 IPR000679 GO:0006355|GO:0043565
Rops1g01646 211 ProSiteProfiles GATA-type zinc finger domain profile. 85 121 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01646 Rops-Chr1 34873893 34874623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01646 1 211 C2C2-Gata Transcription Factor Family AT3G50870 47.308 3.64e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops1g01646 GATA 4.7e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01646 - - gmx:100790571 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01646 1 34873893 34874623 Rops1g01646 1 34873893 34874623 ECH
Rops1g01646 1 34873893 34874623 Rops2g03363 2 61863196 61864290 PCT