Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01644 ATGGCAAGTACTTTAGGTTATAATCTGCCCAATAGGGATGATTCTTCTTCTTCTCCAACTGTAGGGCAAAGAATTAGTGATCAACCTCCTCAACCTCACACATTAATCATCAATGATCCACCTCAAACTTCACAACACCAACATCATCTGTATCAACACCACCACCAATCTCCAAGACCCACCACCACAGATCCAGATCTAATAAGCTCATCTCCTATTCCCACAACAACAACAACAACAACACAGACAACTACGGCAACAAAAATTTCAACAACCCCTTTGGTCAAGTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGGAGCCACGTGGTAGATGGTTGTGGCGAGTTCATGCCAAGTGGAGAAGAAGGAACCCCAGAATCACTCAAGTGTGCTGCTTGTGAGTGCCACCGCAATTTTCACAGAAAAGAGGTTGAAAGGGAACGCCAAAACCTTCCCAATTATCATACCCGTTATCCCAATAAACACAATAATGGTCACCTTCAGTTTCCTACACCACCCTCTTCTCTTTCTCTCCATCATCAGCATCATAGATTTTCACACGTGGTGGCTACCCCTACAGCAGGTCCAGTTCCCCCTTTGATGATGGCTTTTGGAGCCCCAGCTGAGTCCTCAAGTGAAGATCTAAACATGTTTCGGTGTGACGCGGGTGCACAGTTGTCACTGCAGGTGCCACCACTTTCGAAGAAGAGGTTCCGTACAAAGTTCACACAGCAACAGAAGGACAGGATGATGGAGTTTGCTGAGAAGTTGGGGTGGAAGATGCAGAAACATGATGAACAAGAAGTGCAGCAATTTTGTTCCCAAGTTGGTGTCAAAAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAACAAGCAATGAAGAAGCAGCAAATGTAA 909 0.4543 MASTLGYNLPNRDDSSSSPTVGQRISDQPPQPHTLIINDPPQTSQHQHHLYQHHHQSPRPTTTDPDLISSSPIPTTTTTTTQTTTATKISTTPLVKYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLKCAACECHRNFHRKEVERERQNLPNYHTRYPNKHNNGHLQFPTPPSSLSLHHQHHRFSHVVATPTAGPVPPLMMAFGAPAESSSEDLNMFRCDAGAQLSLQVPPLSKKRFRTKFTQQQKDRMMEFAEKLGWKMQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAMKKQQM* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01644 302 ProSiteProfiles 'Homeobox' domain profile. 236 300 IPR001356 GO:0003677
Rops1g01644 302 MobiDBLite consensus disorder prediction 1 47 - -
Rops1g01644 302 FunFam Zinc-finger homeodomain protein 2 226 299 - -
Rops1g01644 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 97 146 IPR006456 -
Rops1g01644 302 Gene3D - 230 299 - -
Rops1g01644 302 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 96 147 IPR006456 -
Rops1g01644 302 Pfam ZF-HD protein dimerisation region 95 147 IPR006456 -
Rops1g01644 302 MobiDBLite consensus disorder prediction 56 88 - -
Rops1g01644 302 SUPERFAMILY Homeodomain-like 233 299 IPR009057 -
Rops1g01644 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 295 - -
Rops1g01644 302 NCBIfam homeobox domain, ZF-HD class 238 295 IPR006455 -
Rops1g01644 302 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01644 Rops-Chr1 34771307 34773277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01644 63 302 ZF-HD Transcription Factor Family AT2G18350 47.368 4.85e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops1g01644 ZF-HD_dimer 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01644 - - vra:106776405 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01644 1 34771307 34773277 Rops1g01644 1 34771307 34773277 ECH
Rops2g03359 2 61748713 61750988 Rops1g01644 1 34771307 34773277 ECH
Rops1g01644 1 34771307 34773277 Rops2g03359 2 61748713 61750988 PCT