Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01641 ATGGCATCGTCTTGGACTCAAAGGCAAAACAAGCTATTTGAAGAGGCCCTTGCTATATATGATAGGGAAACCCCTGACAGGTGGCAGAATGTTGCAAAAGTGGTGGGAAAATCCGTAGAGGAGGTGAAAAAGCACTACGAGATCCTCAAAGAAGATGTCAAGCGCATTGAGCGTGGTGAGGTCCCATTTCCTTATAAAGATTTGAAAACCAATGAAGGGGTTGTTTTGCTGCTACAAACGGTGGAACAAGGGGCTTCAATGGTTGGTGTGGTGGGCTTGCGGTGGTGTTGTGCTGCAGATCTGAAAATCAATGGTGGAGGAGATCTGATGCTAAGGTTCATTCATTCACGGGTCTCCTTTTTTTTGATGAAACGGTAG 378 0.4577 MASSWTQRQNKLFEEALAIYDRETPDRWQNVAKVVGKSVEEVKKHYEILKEDVKRIERGEVPFPYKDLKTNEGVVLLLQTVEQGASMVGVVGLRWCCAADLKINGGGDLMLRFIHSRVSFFLMKR* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01641 125 SMART sant 1 52 IPR001005 -
Rops1g01641 125 CDD SANT 4 50 IPR001005 -
Rops1g01641 125 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Rops1g01641 125 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 67 IPR044636 GO:0003700
Rops1g01641 125 FunFam Transcription factor SRM1 1 63 - -
Rops1g01641 125 Coils Coil 39 59 - -
Rops1g01641 125 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Rops1g01641 125 Gene3D - 2 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01641 Rops-Chr1 34746571 34753535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01641 - - pvu:PHAVU_003G254400g 117.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g03358 2 61709767 61709988 Rops1g01641 1 34746571 34753535 ECH
Rops1g01641 1 34746571 34753535 Rops1g01641 1 34746571 34753535 ECH
Rops3g00562 3 7026536 7028353 Rops1g01641 1 34746571 34753535 ECH
Rops1g01641 1 34746571 34753535 Rops2g03358 2 61709767 61709988 ECH