Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01639 ATGAGAACTGTTAATAGTGAAGAAGCGGAGACGTTACCAAATCCCCGCTCCTTTAAGGTACATAGTAAAATGTGCATAGAACTCATGAAATTAGTGGATAAAATCTCAAGGATATTTCCTGATATAGAAGAAGCACGGCCACGATGCTCATCAGGAATAGAGACTCTGTGCTTGCTGAACAAGGCAATTGAGAAAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTTGCTGTGACAGGGGATACAGTACTCTCAAGATGCCAAAAGGTATCAAGGTCATTAGAGCAAAGCTTAATCCAGATTCAGGATATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCCACATTTGTTCTGGACTCTGCTGAAGAAGAGGCTGGGAGGGTTGTGATAGAGTTGCTTCGGCAAGATACATCAACCTCAGATTCAGTGGATGATTCTGAATTTAAAGCTCTTCAGTTTGCAGCATCACGACTGAATATAACATCCCCAAAAGCCATCTTAATAGAGAGACGATCTATCAAGAAGTTACTAGATAAAGTTGGACCAAATGACCAGAAAAAGAAGAAAATCTTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAACTTCATTGTGGGAGAACAAATGGAGAAGGTCTATTCTCGATGTGAAGAACCAATTGCAAAGGAGAACTCTAGTAATGAGTCTCTACGAAGCCATCATGTTGAGTCTGAACCATGCTTGAACTATGATCAATACGGAACTCATACCAGTGAGTTGGATAGAGCTACACCCCCTGAGGAATACAAGTGCCCAATATCATCAAGGTTGATGTATGAGCCTGTTATCATTGCTTCAGGAGTAACATATGAAAGGATGTGGATAAAAAGGTGGTTTGATGAGGGTAAAAATACATGCCCAAAAACCAAAAAGAAACTAGTCCATATGGCATTGACTCCAAATGTTGTCATGAAGGACTTAATAACAAAGTGGTGCAGAAATAATGGAGTCTCCATCCCTGACCCAAGTAGGCTAGCAGAAGATTCTCATTCATGGGAAGCTTCAAACATTTCCATTAAGAGTTTTGGAAGTTATTTCAATGATTTGAATTTGCCAGTGGATCTTAGTAACATTTCACTTGGATCATTGGATACTAGTTATAGTTCAGATGCCTCACGTGTTAAGACCACTCGTGACTTAAATTTGATGTTGATCAAGAGTAATGACAATTCTCAGAAGCTTCAAGCTCATGCAGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAGGATCTGAAAGATCATTTGAAAAGCAATTGCCAATATTTTTCTTCTGTGTCACCTGAGAATTTTGTTGAACCACTAGTCAGATTTCTGAGCAATGCATATGATCTGCATGACGTAAAAGCTTTGAGAGCTGGAATTCAGCTCCTGCTGGAATTTGTGAACAACTGCAGAAATGCTATGGCTAATTTAGGTGAAGATACATTCATTAAGTTGGCAAGTTTTCTTGATTCAGAAGTGATAGGAGAAGTTCTTTCCATAATGGAAGAAATGTCTGGGTATGGGTATAGTAAAGCTAAAATTGCAGCATCCAGTGCACTCACTTCTGTTTTAAACACACTTGATTCTGATAACAAAGGGTTCCAACAAAAAGCTATTAGAATATTGTACAATTTGTCCTTCAATGGTGAAGTTTGTCCCTACTTGCTATCTCTCAAGTGCATCCCGAAATTGCTGCCATTTTTTAAAGACAGGCCCGTTTTGAGATACTGCATATATATATTGAAAAATCTTTGTGACACTGAAGAGGGTATGAATTCTATTGCTGAAACTAAGGGATGCATATCTTCTGTTGCTGAAATTCTCGAGACAGGCAGTAATGAGGAACAAGAACATGCACTTGCTGTTCTAGTATCTTTATGCTCTCAAAGTGTGGATTATCGTAAGTTGGTTATGGATGAGGATATCACTCCTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAAGTGCATTGGAACTGCTCCATCTTTTGACAGATGCTAAATGTGTTGAGAATGAAGATTGCCCGGAACCAAACATCAACAGCACTTCTCGAGATTCCAACAGTCACCCTGAAGAAAATAAATCATTAAAGGGTTCTCCATTTAAGAAGAAACTATCACTTTTCTCAAAATTCAATTCAAATGCATCAAAAACCAAAAGGTGA 2286 0.3867 MRTVNSEEAETLPNPRSFKVHSKMCIELMKLVDKISRIFPDIEEARPRCSSGIETLCLLNKAIEKAKLLLQHCSECSKLYLAVTGDTVLSRCQKVSRSLEQSLIQIQDMVPVMLAVEVSRIIDDLECATFVLDSAEEEAGRVVIELLRQDTSTSDSVDDSEFKALQFAASRLNITSPKAILIERRSIKKLLDKVGPNDQKKKKILRYLLYLLKKHGNFIVGEQMEKVYSRCEEPIAKENSSNESLRSHHVESEPCLNYDQYGTHTSELDRATPPEEYKCPISSRLMYEPVIIASGVTYERMWIKRWFDEGKNTCPKTKKKLVHMALTPNVVMKDLITKWCRNNGVSIPDPSRLAEDSHSWEASNISIKSFGSYFNDLNLPVDLSNISLGSLDTSYSSDASRVKTTRDLNLMLIKSNDNSQKLQAHAEIHDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNCQYFSSVSPENFVEPLVRFLSNAYDLHDVKALRAGIQLLLEFVNNCRNAMANLGEDTFIKLASFLDSEVIGEVLSIMEEMSGYGYSKAKIAASSALTSVLNTLDSDNKGFQQKAIRILYNLSFNGEVCPYLLSLKCIPKLLPFFKDRPVLRYCIYILKNLCDTEEGMNSIAETKGCISSVAEILETGSNEEQEHALAVLVSLCSQSVDYRKLVMDEDITPLFYISQNGNDKGKESALELLHLLTDAKCVENEDCPEPNINSTSRDSNSHPEENKSLKGSPFKKKLSLFSKFNSNASKTKR* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01639 761 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Rops1g01639 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 347 IPR013083 -
Rops1g01639 761 Gene3D - 408 717 IPR011989 -
Rops1g01639 761 PANTHER U BOX DOMAIN-CONTAINING 25 712 - -
Rops1g01639 761 MobiDBLite consensus disorder prediction 715 742 - -
Rops1g01639 761 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Rops1g01639 761 CDD RING-Ubox_PUB 274 323 IPR045210 -
Rops1g01639 761 SUPERFAMILY RING/U-box 264 350 - -
Rops1g01639 761 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Rops1g01639 761 SUPERFAMILY ARM repeat 435 705 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01639 Rops-Chr1 34716416 34724094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01639 15 753 U-box Gene Family AT4G36550 38.208 1.97e-148 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01639 - - gmx:100791627 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01639 1 34716416 34724094 Rops1g01639 1 34716416 34724094 ECH
Rops2g03355 2 61661167 61667253 Rops1g01639 1 34716416 34724094 ECH
Rops1g01639 1 34716416 34724094 Rops2g03355 2 61661167 61667253 PCT