Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01638 ATGAATTTCACACAAGAGAGGAGTACTGTTAGCTTAGATTTTACAGTTTTTGTGGTGGAAGGAAGACTGATATGCTGTGCGAACATGTCGTTCAAAAGCATAGTAAGGGAACTCAAGGAGATGAGAGATGGGCTTGGTAGCTCATCAAGGCGAGGTGCAGGAAGCAGGCATTGGCACAGTCGGACAAAGTCTCACATTGTTCCAGATATCACTCTAACTTCACTTGAACCTATTCAGCAGGGACAATGGGCAAATCTACCATCTGAATTGCTTCTGGACATAATCCGGAGGGTTGAAGAGAGTGAGGCGTCTTGGCCTGCACGTGCCGTCGTTGTTTCTTGTGCCTCTGTATGTAAATCATGGAGGACCGTTACAAAAGAGATCTACAAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATTTCATTAAAGCAGCCGGGTCCCCGTGATTCTCCAGTACAGTGCTTTATCAGGAGGGACAGAGAAACTTCTACGTATCTATTGTACATTGGACTGGTGCCATCGGAGAATGAGACTGATAAGCTGTTACTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACAGACTTTGTCATCTCTTTGGTTGCAGACGATTTTTCTCGGTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATATATGACAGCCAACCTCCGCATGGAGTTGGGATTCAACCAAATAGTCAGTCTAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATGTTGTTAGCACCGTTTCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCAAGAAGAATGCACTGCTCCATGAACTCCATACCTATCTCAGCTATTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTGAAATCATTGATGAACATTTTTCTCCCTCACCAGCACCAAAAGGAAAAGGTCCAATTAAAGATTCAAACAATGCAACCCTCCCAGAGCTACCGGCACAGAGCCAAGACTCAGTTGAGCCTCTGGTGCTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAATTTCAAGGGTCGTGTTACTGTGGCTTCTGTTAAGAACTTTCAACTTGTGGCAGCTGTTGATCCATCTCATAATGTCTCTGCTGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGTAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATATGCTTGAGCAGCTTTGATACGAAACCAGCCTGTGAATGA 1329 0.45 MNFTQERSTVSLDFTVFVVEGRLICCANMSFKSIVRELKEMRDGLGSSSRRGAGSRHWHSRTKSHIVPDITLTSLEPIQQGQWANLPSELLLDIIRRVEESEASWPARAVVVSCASVCKSWRTVTKEIYKTPEQCGRLTFPISLKQPGPRDSPVQCFIRRDRETSTYLLYIGLVPSENETDKLLLAAKKIRRATGTDFVISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGVGIQPNSQSSRRFHSKQVSPRVPACNYVVSTVSYELNVLRTRGPRRMHCSMNSIPISAIQEGGNAPTPTSFPEIIDEHFSPSPAPKGKGPIKDSNNATLPELPAQSQDSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01638 442 Gene3D - 76 131 - -
Rops1g01638 442 ProSitePatterns Tub family signature 1. 370 383 IPR018066 -
Rops1g01638 442 Gene3D Tubby Protein; Chain A 141 442 IPR025659 -
Rops1g01638 442 MobiDBLite consensus disorder prediction 296 340 - -
Rops1g01638 442 Pfam F-box domain 83 129 IPR001810 GO:0005515
Rops1g01638 442 CDD F-box_AtTLP-like 83 127 - -
Rops1g01638 442 PANTHER TUBBY-RELATED 75 440 - -
Rops1g01638 442 SUPERFAMILY Tubby C-terminal domain-like 132 442 IPR025659 -
Rops1g01638 442 FunFam Tubby-like F-box protein 140 442 - -
Rops1g01638 442 Pfam Tub family 144 437 IPR000007 -
Rops1g01638 442 ProSitePatterns Tub family signature 2. 427 442 IPR018066 -
Rops1g01638 442 SUPERFAMILY F-box domain 77 127 IPR036047 GO:0005515
Rops1g01638 442 PRINTS Tubby superfamily signature 198 214 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 263 290 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 370 386 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 399 418 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 214 238 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 352 369 IPR000007 -
Rops1g01638 442 PRINTS Tubby superfamily signature 420 442 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01638 Rops-Chr1 34707104 34711708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01638 29 442 TUB Transcription Factor Family AT2G18280 64.251 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops1g01638 Tub 8.5e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01638 K19600 - gmx:100798958 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01638 1 34707104 34711708 Rops1g01638 1 34707104 34711708 ECH
Rops2g03353 2 61646408 61649436 Rops1g01638 1 34707104 34711708 ECH
Rops1g01638 1 34707104 34711708 Rops2g03353 2 61646408 61649436 PCT