Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01632 ATGAATGATTTGATGACGAAATCGTTCCTAAGTTATGTTGAACTGAAGAAACAGGCACAGAAGGACCTTGAAGATGATCTTGACATTGAAGCCGGGAAACTCAACCCCACAGAAGACCCTAACCTCTCTCAATTCTTCCAAGAAGTGGAAGCAATAAAGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGACAAAGTCCACTCACAGTGCCAAAGTTTTACGTGGGCTAAGAGACCGTATGGATTCTGACATGGTTGCCGTGCTTCGCAAGGCAAAGATTATCAAGGCAAGACTAGAAGTTCTTGACCAATCCAACATAGCCAATCGAAGTATATCAGAATGTTACAAAGAGGGAGGCCCCATTGATAGAACAAGAATGTCTGTGACAAACGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGATTTTAATTCCTTGAGGGCCAAGATTGTATCAGATCACAAGGAAGATTTGAAGAGAAGGTACTATACTGTAACGGGTGAGGTTCCAAGTGAGGAGGTCATGGAGAAGATGATTTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACTGAGGCTGACATGGGTACTCAGGTTAGGCACGAGGCTGTGATGGATATCCAGAGGAGTTTGAATAAACTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACCCAAGGAGAAAAAGTGGATAACATTGAGGATAATGTAGCCAATGCGGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAGCCAGATGAGGAAGAAGAATAAAAAATGGGTCTTTTGGGTTTTTGCTGTGGGGCTGATTATACTGCTTGTGTGCATCATTGCAATGTTGTCTTCTTGA 897 0.4214 MNDLMTKSFLSYVELKKQAQKDLEDDLDIEAGKLNPTEDPNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKAKIIKARLEVLDQSNIANRSISECYKEGGPIDRTRMSVTNGLRVKLRDMMNDFNSLRAKIVSDHKEDLKRRYYTVTGEVPSEEVMEKMISGSLKVEFLAGKTEADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVANAGNYIHGGTNSLYYASQMRKKNKKWVFWVFAVGLIILLVCIIAMLSS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01632 298 CDD SNARE_syntaxin1-like 208 263 - -
Rops1g01632 298 SUPERFAMILY t-snare proteins 39 259 IPR010989 GO:0016020|GO:0016192
Rops1g01632 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Rops1g01632 298 Pfam SNARE domain 240 290 IPR000727 -
Rops1g01632 298 Gene3D - 37 168 - -
Rops1g01632 298 Pfam Syntaxin 44 239 IPR006011 GO:0016020
Rops1g01632 298 Coils Coil 52 72 - -
Rops1g01632 298 PANTHER SYNTAXIN 39 288 IPR045242 -
Rops1g01632 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Rops1g01632 298 SMART tSNARE_6 199 266 IPR000727 -
Rops1g01632 298 CDD SynN 42 192 IPR006011 GO:0016020
Rops1g01632 298 Gene3D - 200 297 - -
Rops1g01632 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Rops1g01632 298 FunFam Syntaxin 132 199 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01632 Rops-Chr1 34669783 34670679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01632 1 298 SNARE and Associated Proteins AT2G18260 60.586 5.01e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01632 K08486 - gmx:112997615 525.398