Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01624 ATGGAGAAGTCACCACCGAATAACCGATTTCCTCAAACTCCAAATTCCAGATTCTCAACCAAGAAGGGAAGAAGTGGTTATGAACCATCAGATACAGAGACAGAGTGGCAAGAGATTCCACGGCATGAACGAGAAAGAAAGAACATTACTTTGGGTCCAGAAGAAACAAAAACTCTGACTCTAATGAACAAAAGCCCCATAGCTCCGGGCCAGCCACGAAGAAGACACCACAGCAAGTCACCCTATAAGCTGCGCATAGTAGATGATAGTGATGATTCGTCATCTTACGTAACAGGTTTGAACATGCGCAGAAATATAAGTCCTTTGCCAAGACCTGACCTTGGAAGAACCGTGTCTCCTTATAGTAGAAATCACGAGCAAAGAACACCCTCTAGAGAGATTAGAAAAGCTGGTTCAGGGCTTCTTGAAGTGGAGAGAGCGACCGAGAAGCCAAACTACAGGAGAGCAATGACTGCTCCAAGGTTGAGGGACCAACAAACCAATCATGGGAAAACATTGCAAAATGGGGGGAGAACCAAAGACATGGTTCTGAAACAGAAGGAAACTGCTACTTTCAAAGCACCTTCAGTGGGGGAAATCAATGAAATGATAGCCCAAGTGAAACTATCACAAAACCCCACTGGTGATTATTCATCCCAGCTAGAAAGTACAGAGTCAATTCAACCAGGTGATCTTTTCTTTTCTCGTGATTGCAATGCCTTGCAAGGAAAGAATTCTTCACTGCCAAAAAGCCTTCAACAACATGGGTATTTTAGCCCAAGGCCACGGGTCACTACCATCAATCCCATGAGAACCCCCTCTGAAAACTGTAACATCAATATGAATATCCGAGGAACCTCATCAAGTAATGTCTTGTCTCGATCAGCTACGGGCACAACAAGCAGAAAGGACAGTGTTACGGGGAAGCCAAGTTCCACCACTACCGTGACAAGTGATGCTAGTGGAAAGACAAGTGCAAGCACGTGGAAATTCACATCCAACCTTAAAAAGAATCAGAAAGATGCATGGTTTGCTTGTATGAAAACAGGAAACTGTAGGACAAGAAGATCACCTGAACGTCGACCAATTGATGAATCTTCATTCATTGAGAGGGCAAAAGTGGTGGAAAGCCTCCCACAATTCTGGGCAGATAAACATCAACCTGCTTCACTTAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAATTAGTGTCTCAGGGCTCCTGTCCTCATATTTTGCTCCAAGGACCCGCTAATTCCGGGAAAAGAGAACTGGCAATGGCTCTTCTTCGAGAAATTTACGGTGATGCATGTTGTAATCTGTCCCATGATTTAAGACGTTTTCCTATTCAGGAAAAATGGCCTACAAAAGTATCCGTTCCAATAACCTCGAGTCCTCATCACATGGAGCTGAATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATTAGCAATATATATGCGATTACCCCCGAAGTCAGCTATATTAATTTCACGTCAGATTATAAAGTAATAATTCTTTATGAGGTCGATAAAGCAGTAGAGAACATCCAGCACATGATCAAATGGATCATAGACCGCTATTCAGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATTATTGGACCTGTGAAAAACCGGTTCAAAGTTATCAATGTTGATGCTCCTCAAACTCACGAAATTATCGAGGTTCTTATTCAGATAGCAAAGAAAGAGGAAATCGATCTGTCAATGAATTTTGCTATGAAGATTGCTAAAAAATCTAAGCAGAACCTCAGGGAAGCAATCATGGCACTTGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAGCAACCAATTCCGGTTGGATGGGAGAAGATCGTAATAGAAGTTGCTGCAGAGATCCTATCTGATCCATCATTTTCACGTTTACTCTCAATAAGAGGGAAATTTCAAATGCTTCTCCTGGATTTTGTCCACCCCAAATTGATTCTCCAGAAACTTGTGGAGCAGCTCCTAAAAAGAATTGAGGCCAGCTTAAAAAGGGAGCTCTACTACTGGCATGCTTATTATGTATTATCTGGGAAAGTAGATATGGATAATCGTGAAGAATCAAGTGCAAGGACTTCGGCTTTCTCTCACCCTAAGCTCAACGAAAGAATACTTTCTTCGTTGTCACGGAGAACTGTTGCTGCTCACCCCTGGCACGACTTGGAGATTGGGCCAGGAGCTCCGGCAGTTTTCAACTGTGTAGTTGAAATTGGCAAAGGCGGTAAGGTGAAGTATGAGCTGGACAAAACAAGTGGACTTATAAAGGTTGATCGTGTTCTTTACTCATCAGTTGTCTACCCACACAACTATGGTTTTATCCCACGAACCATTTGTGAAGACAGTGATCCTATGGACGTTCTGATTCTAATGCAGGAGCCTGTGCTACCTGGCTCCTTCCTTCGTGCTCGTGCTATTGGACTAATGCCCATGATTGACCAGGGTGAGAAGGATGACAAGATCATAGCAGTTTGTGCCGATGACCCTGAGTTCCGCCATTACAGAGACATTAAGGAACTTCCTCCACATAGGCTAGCTGAAATCAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAAAAGTTGATGTTGAAGACTTTCTACCAGCTGAAGCTGCCATTGATGCCATCAAGTACTCCATGGACCTGTATGCTGCGTACATAGTTGAGAGCTTAAGGAAGTGA 2766 0.4266 MEKSPPNNRFPQTPNSRFSTKKGRSGYEPSDTETEWQEIPRHERERKNITLGPEETKTLTLMNKSPIAPGQPRRRHHSKSPYKLRIVDDSDDSSSYVTGLNMRRNISPLPRPDLGRTVSPYSRNHEQRTPSREIRKAGSGLLEVERATEKPNYRRAMTAPRLRDQQTNHGKTLQNGGRTKDMVLKQKETATFKAPSVGEINEMIAQVKLSQNPTGDYSSQLESTESIQPGDLFFSRDCNALQGKNSSLPKSLQQHGYFSPRPRVTTINPMRTPSENCNINMNIRGTSSSNVLSRSATGTTSRKDSVTGKPSSTTTVTSDASGKTSASTWKFTSNLKKNQKDAWFACMKTGNCRTRRSPERRPIDESSFIERAKVVESLPQFWADKHQPASLNGFICNKQEAQLLKELVSQGSCPHILLQGPANSGKRELAMALLREIYGDACCNLSHDLRRFPIQEKWPTKVSVPITSSPHHMELNVNSEPNAKYALMGLIKEISNIYAITPEVSYINFTSDYKVIILYEVDKAVENIQHMIKWIIDRYSDICKLVLCCEDDADIIGPVKNRFKVINVDAPQTHEIIEVLIQIAKKEEIDLSMNFAMKIAKKSKQNLREAIMALEACKAHNYPFSEEQPIPVGWEKIVIEVAAEILSDPSFSRLLSIRGKFQMLLLDFVHPKLILQKLVEQLLKRIEASLKRELYYWHAYYVLSGKVDMDNREESSARTSAFSHPKLNERILSSLSRRTVAAHPWHDLEIGPGAPAVFNCVVEIGKGGKVKYELDKTSGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLILMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIDAIKYSMDLYAAYIVESLRK* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01624 921 Gene3D - 633 714 - -
Rops1g01624 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 619 IPR027417 -
Rops1g01624 921 MobiDBLite consensus disorder prediction 1 81 - -
Rops1g01624 921 FunFam Replication factor C subunit 3 380 571 - -
Rops1g01624 921 PANTHER INORGANIC PYROPHOSPHATASE 689 921 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Rops1g01624 921 FunFam Soluble inorganic pyrophosphatase 4 739 917 - -
Rops1g01624 921 MobiDBLite consensus disorder prediction 24 52 - -
Rops1g01624 921 MobiDBLite consensus disorder prediction 103 132 - -
Rops1g01624 921 SUPERFAMILY Inorganic pyrophosphatase 738 916 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Rops1g01624 921 SUPERFAMILY post-AAA+ oligomerization domain-like 633 701 IPR008921 GO:0003677|GO:0006260
Rops1g01624 921 Gene3D - 573 630 - -
Rops1g01624 921 Gene3D Inorganic pyrophosphatase 739 917 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Rops1g01624 921 MobiDBLite consensus disorder prediction 246 325 - -
Rops1g01624 921 CDD pyrophosphatase 757 909 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Rops1g01624 921 ProSitePatterns Inorganic pyrophosphatase signature. 807 813 - -
Rops1g01624 921 FunFam replication factor C subunit 3 572 630 - -
Rops1g01624 921 Gene3D - 380 571 IPR027417 -
Rops1g01624 921 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g01624 921 Pfam Inorganic pyrophosphatase 760 911 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Rops1g01624 921 Hamap Inorganic pyrophosphatase [ppa]. 756 912 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01624 Rops-Chr1 34577283 34590329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01624 381 701 Core DNA Replication Machinery Family AT5G27740 36.728 9.58e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01624 K10756 - gmx:100795321 992.26