Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01616 ATGGCCAACGAGCTCATTCCTCAACCAATTCGTGGCTACTTAGTCAATACCTTCCGTTACCTCATCAAGCCTCGTTCCCCTACTCTCACCCTCATCATTGAAGAGTCCAGTGGCATAGTACGCAACCAAATCTATGATGCTGCTGAGGCTTACCTTTCCACCAGACTGAGCCCCGAAAATGAAAGGCTCAAAATCACCAAGAGTCCAAAGGAGAAGAAATTGACCATTCGTCTAGAGAAGGGTGAAATGGTAATCGACACCTACAATGGTGCTATCCTCAAATGGAGATTCATCTGTGCTGAATCAGAGAAGAACACCAGCCCCAACGAGCCTAACAATATCTCCCTAAGGTCTGAAAAACGGTATTTCGAGCTGAGTTTTCACAAGAAGTACAAGGAAATGATCTTGGAATCTTATCTACCCTTCATTCTTGACAAAGCCAAGGAGATGAAAGATGAGGAAAGGGTGTTGAAGATGCATACTTTGAATACTTCCTATTGTTATGCTGGGCTCAAATGGGATTCCATAAATCTTGAACACCCTTCCACTTTTGAGACTCTGGCCATGGAGCCAGAGCTGAAGAATGCCATCATAGACGATCTAAATAGGTTTGCGAAGAGAAAGGACTTTTACAAGAAAGTTGGGAGGGCATGGAAACGTGGGTACTTGTTGTATGGCCCTCCTGGTACTGGCAAATCCAGTTTGATTGCTGCAATGGCTAATTACTTGAAGTTTGATATCTTTGACTTGCAACTTGGCAACATCATGAGGGATTCGGACCTCAGAAAGCTGCTTCTTGCTACTGCAAATAGATCAATATTAGTCATTGAAGACATTGATTGCAGTGTGGATCTTCCGGAGCGTCGGCATGGAGAACCACGTAAACAAGCTGACGTACAGGCTCATCATGAATCTGATGGATGGATGCAGTTGACTTTGTCTGGATTACTCAACTTCATAGATGGACTATGGTCTAGTTGTGGAGACGAAAGAATAATCATTTTCACCACCAACCACAAGGAAAGGCTAGACCCAGCATTGTTGAGGCCAGGAAGAATGGACATGCACATTCACATGTCCTATTGTTCCTACCAAGGCTTCAAGATTTTGGCCTCAAATTACTTGGAAATTTCCCCTGACCACCACCTCTTCGGGGAAATTGAGGGGCTAATAGAGGACACACAGATAACCCCTGCCCAAGTGGCAGAGGAATTGATGAAGGATGAAGATGCTGAGGCGACACTTGAAGGATTCGTAAAGCTACTTAAGCGGAAGAAGATGGAAGGTGATGTATGTGAGAACTGTAGTCCAGATAAAGAAGAACCTCATCAGCAATCTAAAAGGCGTAAGGTTGGTTGCAAGCAAAGAAGAGGTGTTGGGATCAGCAAGAGCAATGTTGGTGTTACCCAAAGAAGGACAAGAAGAATTAGCAGAGAGAGTAGTTTGTAA 1449 0.4417 MANELIPQPIRGYLVNTFRYLIKPRSPTLTLIIEESSGIVRNQIYDAAEAYLSTRLSPENERLKITKSPKEKKLTIRLEKGEMVIDTYNGAILKWRFICAESEKNTSPNEPNNISLRSEKRYFELSFHKKYKEMILESYLPFILDKAKEMKDEERVLKMHTLNTSYCYAGLKWDSINLEHPSTFETLAMEPELKNAIIDDLNRFAKRKDFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIMRDSDLRKLLLATANRSILVIEDIDCSVDLPERRHGEPRKQADVQAHHESDGWMQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKERLDPALLRPGRMDMHIHMSYCSYQGFKILASNYLEISPDHHLFGEIEGLIEDTQITPAQVAEELMKDEDAEATLEGFVKLLKRKKMEGDVCENCSPDKEEPHQQSKRRKVGCKQRRGVGISKSNVGVTQRRTRRISRESSL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01616 482 Gene3D - 172 357 IPR027417 -
Rops1g01616 482 MobiDBLite consensus disorder prediction 431 482 - -
Rops1g01616 482 SMART AAA_5 218 363 IPR003593 GO:0016887
Rops1g01616 482 Pfam ATPase family associated with various cellular activities (AAA) 223 360 IPR003959 GO:0005524|GO:0016887
Rops1g01616 482 FunFam AAA-ATPase ASD, mitochondrial 174 357 - -
Rops1g01616 482 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Rops1g01616 482 PANTHER BCS1 AAA-TYPE ATPASE 2 427 - -
Rops1g01616 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 407 IPR027417 -
Rops1g01616 482 Gene3D - 358 429 - -
Rops1g01616 482 CDD RecA-like_BCS1 197 359 - -
Rops1g01616 482 Pfam Domain associated at C-terminal with AAA 6 98 IPR025753 -
Rops1g01616 482 MobiDBLite consensus disorder prediction 431 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01616 Rops-Chr1 34400292 34403540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01616 196 359 Calmodulin-binding Proteins AT3G56690 27.907 5.75e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01616 - - gmx:100789621 807.749