Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01613 ATGCTTTCATGGAAGTGCCTTCGATTCGTCTCGGATAAGGTAGAACAAGTTGTACCTGACAGCTTCTATTTACTTTCGTCTTTTCTATCTGTTTCAAGATACAAACAAGTTAAAGGGTATAGTGGAGACCTAGATAGAGCTGAAAAACAAACTAATAAGAGTGCCTTAAAATTGCTCTCACTCATCTTTGCCTTCTATGTTAACTGTCTCAGGCAATCAGTGGAATTGGAAAAGGAAGGTGTTATTGTCGCTGCTGTGGTCAGTGCAGTTGCAAAGACTCCATCTTTAGAAGACATGGAGAAGGGACGTAAATACCTTGGACTTGACTTCTTCACCTATAGTGAACTCGAAGAGGCCATAAACTACTTTGATTCAGCCAAAAGACTAGGAGATAGAGGCTTTGGGACAATGTACTATGGCAAACTTCGGGATGGGCGTGTTGTTGTAGTGAAAAGGATGTCTGAGAACAGTTACAAGAGAGTAGAGCAATTCATGAATGAAGTTGAGATATTAACTGGCTTACACCACCAGAATCTTGTGTCATTATATGGATGCACTTCTCACCACAGTCGTGAACTTCGCTTGTATATGAATATGTTCCTAATGGAACTGTTGTTGATCACCTTCATGGTAAACTTGCAAAACCTGGCACCATCGTCATGGCATATCGGAATGAATATTGCCATAGGAACCGCAAGTGCATTGGTATATCTTCATGCTATCGACATCATCCATAGAGATGTGAAAACCAACAACATTCTCCTTGACAATCACTTTGGTGTCAAAGTAGCAGATCTTGGACTTTCACGTCTTTTACCAAACCATGTAACTCACATTTCAACAAACTCCACAAGGACTCCTGGTTATGTAGATCCAAAATACCATCAACACCACATCACAAATTATCAATTAAGCTATCGCTTTACCCATTATGGAATCTAA 942 0.4002 MLSWKCLRFVSDKVEQVVPDSFYLLSSFLSVSRYKQVKGYSGDLDRAEKQTNKSALKLLSLIFAFYVNCLRQSVELEKEGVIVAAVVSAVAKTPSLEDMEKGRKYLGLDFFTYSELEEAINYFDSAKRLGDRGFGTMYYGKLRDGRVVVVKRMSENSYKRVEQFMNEVEILTGLHHQNLVSLYGCTSHHSRELRLYMNMFLMELLLITFMVNLQNLAPSSWHIGMNIAIGTASALVYLHAIDIIHRDVKTNNILLDNHFGVKVADLGLSRLLPNHVTHISTNSTRTPGYVDPKYHQHHITNYQLSYRFTHYGI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01613 313 Gene3D Transferase(Phosphotransferase) domain 1 208 307 - -
Rops1g01613 313 Pfam Protein kinase domain 125 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01613 313 ProSiteProfiles Protein kinase domain profile. 123 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01613 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Rops1g01613 313 Gene3D Phosphorylase Kinase; domain 1 95 197 - -
Rops1g01613 313 SMART serkin_6 123 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01613 313 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 57 297 IPR044652 GO:0004672
Rops1g01613 313 SUPERFAMILY Protein kinase-like (PK-like) 104 300 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01613 Rops-Chr1 34385353 34388269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01613 88 308 Receptor kinase-like Gene Family AT1G25390 54.018 1.37e-71 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops1g01613 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01613 - - gmx:100794703 280.411