Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01587 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATAGAGAACCCTACCAACAGGCAAGTCACCTACTCCAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCATTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGAAGACAGATCAGGCATAGAATTGGTGAGGGTTTGGATTTGGACGATCTGAGCTTCCAGCAACTGCGCAATCTTGAAGAGGATATGGTTTCTTCCATAGGGAAAATTCGCGAAAGGAAGTTCCATGTGATCAAAACTCGGACTGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGGATCAGCAGCAGTTGCATTGGCCAATGGTGCCTCCAACCTATATGCATTCTGTCAGCACCATACTCATCTGAATATCCCCCATCACCATGGAGAAGGGTTTAAAACTGATGATCTTCGCCTTGCTTGA 696 0.431 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDDLSFQQLRNLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEGSAAVALANGASNLYAFCQHHTHLNIPHHHGEGFKTDDLRLA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01587 231 Coils Coil 85 105 - -
Rops1g01587 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Rops1g01587 231 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops1g01587 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Rops1g01587 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Rops1g01587 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Rops1g01587 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Rops1g01587 231 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops1g01587 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01587 Rops-Chr1 34042187 34044191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01587 1 220 MADS-box Gene Family AT3G54340 48.636 7.45e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops1g01587 K-box 3.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01587 K09264 - gmx:100784496 411.764