Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01584 ATGCTTTACCAAACCCCCTATCCTCTTCTCTTTCAATTTCATCCCTTGCCTTCCTCCACCATTTCCCTTGCAACCCAATCAACTCCATCCCCTGTTCCTCTGTTTACTTCTCTTCCTTCACCTCAGGCTGAAACAGAAATGGAGTGCATGGAGGCAGCGTTGAAAACCAGTTTAAGGAAAGACATGACCATAAAACTCAGCCCACAAACCTTCATTGAGGAGTTGTCGGGGGTTAATGTGCCAAATGGCACTTCCTGCGATGACTTTTTCGTTGACGACCTCCTTGACTTCTCACACGTGGAAGAAGAGACAGAACAACACAAGGAAGAGGAAGACTCTGCTTGTGTCTCCCTTAAACAACAAAGCCAAAGCCATGAAATTTGCAACCCCGGCACCATCAAAGACGATTATTGCTCTGTGCCCACCAACGAGCTCAGTGTTCCGGCGGATGACGTGGCGGACTTGGAGTGGTTGTCTCATTTCGTTGAGGATTCCTTCTCGGAATTCTCTGCCGTCTTACCCACCGTAACCTTAACGGAAAACCCAAAGGGCCTTGTGGTGAAAGAGCCTGAACCAGAAAGCCCGGTTTTTACTCAGCCATGTTTCAAAACTCCGGTTCAGACCAAAGCCAGAAGCAAACGAACCAGGACCGGTGTTCGGGTTTGGCCACTCGGGTCACCTTCCTTCACTGAATCATCCTCAAGCTCCACCACCACTTCCTCCTCCTCTTCTTCGTCCCCGTCCAGCCCCTTGCTGAACTTAGCCCAAAGTCTCGAGCAGGTTTGCTCGGAGGCAAGGCCGCCGGTGAAGAAACCGAAGAAAAAAACCTCTTCCGACGGCACGGCGGTCCAGGCGCCACGACGTTGCAGCCATTGCGGTGTACAGAAGACCCCTCAGTGGAGAACCGGGCCACTAGGAGCGAAAACGCTTTGCAACGCATGTGGGGTTCGATATAAGTCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGTAGCCCCACATTTTCCAGTGAATTGCACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGACGGTGGGTGGGGTTGATAACGGTTTGGCCCCTGCTACTGTTGTTCCCAGTTTTTGA 1122 0.5196 MLYQTPYPLLFQFHPLPSSTISLATQSTPSPVPLFTSLPSPQAETEMECMEAALKTSLRKDMTIKLSPQTFIEELSGVNVPNGTSCDDFFVDDLLDFSHVEEETEQHKEEEDSACVSLKQQSQSHEICNPGTIKDDYCSVPTNELSVPADDVADLEWLSHFVEDSFSEFSAVLPTVTLTENPKGLVVKEPEPESPVFTQPCFKTPVQTKARSKRTRTGVRVWPLGSPSFTESSSSSTTTSSSSSSSPSSPLLNLAQSLEQVCSEARPPVKKPKKKTSSDGTAVQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETVGGVDNGLAPATVVPSF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01584 373 SMART GATA_3 283 337 IPR000679 GO:0006355|GO:0043565
Rops1g01584 373 FunFam GATA transcription factor 279 363 - -
Rops1g01584 373 Gene3D - 281 356 IPR013088 GO:0006355|GO:0008270
Rops1g01584 373 ProSitePatterns GATA-type zinc finger domain. 289 314 IPR000679 GO:0006355|GO:0043565
Rops1g01584 373 Pfam GATA zinc finger 289 323 IPR000679 GO:0006355|GO:0043565
Rops1g01584 373 MobiDBLite consensus disorder prediction 263 296 - -
Rops1g01584 373 MobiDBLite consensus disorder prediction 226 251 - -
Rops1g01584 373 MobiDBLite consensus disorder prediction 207 251 - -
Rops1g01584 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 284 345 - -
Rops1g01584 373 PANTHER GATA TRANSCRIPTION FACTOR 81 355 - -
Rops1g01584 373 CDD ZnF_GATA 288 336 IPR000679 GO:0006355|GO:0043565
Rops1g01584 373 ProSiteProfiles GATA-type zinc finger domain profile. 283 319 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01584 Rops-Chr1 34001954 34003496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01584 51 373 C2C2-Gata Transcription Factor Family AT5G66320 49.711 3.87e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops1g01584 GATA 5.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01584 - - gmx:100783966 454.136