Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01578 ATGGAACAACCGAAGCCGGAAACAGCCGCGAGCGTTGGAACTACCGCGGCGGCGGAGGTTTTGAGTAGGGATTTGAAGGATTCGCAGCTAGTTGGAGTACCTGTCTCGTTGGTTGGCGATGTTGACATGGTGGAGAGAAACGGTGGTTGTTGCGCGCCTAATTTGGAGGTCTCCGTTGCAGACGGTGCCGTTTTGAAGAGGAAGCGAGGTCGACCAGCTAAAGGACTTCCGAAAACGACACCTCCACCGAGACAGAAGGAGGACGAAGAAGATGTTTGTTTTATATGCTTTGATGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCCAAAGCGTATCATCCCACATGTGTCAAGCGAGACGAAGCGTTTTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATGTATGTATCACTTGTCAGAAGGCTTCCCATTATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGATGTATAAAAGATGCTGATTTTGTTTGTGTCCGAGAAAATAAAGGTTTGTGTGCACTGTGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTTAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTAGAGCTAAAAACCCATTCAAAGGTGCTGCTTCTATGAGCAGTAGAGTTCAAACTCCCCATGAACTTTATCATCTTAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCATATAATTTGAAAAACAAGAAGTCTAAGAGACAGCCAAAGCTTCCTAGCAAGGGGGATTGCTTTGATAGGATTGTTTCAGGTGGTGACACCCATGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTATTGAGTTTGTTTCCCATATAAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTTCAGAATCTCCTGCTGGAGTATGTCAAGAAAAACAATCTTCGTGATCCTCATCAGAAATCTCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGTAAAGCACGTCTTGGCTACATTGAAATGCTAATGCTTCTTGAATCCCACTTTCTTATAAAAGAGAATGGTCATGCGGAAAATACTTTTGGAGCAGGAATTATTGATGCTGTTCCTAATGAAGAGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTAATGATAAGAGATGTATAACAAGTAGAAAGGCTGATGTGCTAGTGCCAAAAATTAATCCAGATGCATATGCTGCAATAGATGTTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTTATCGAGAGTCTAACTGATGATACTGAAAAGATTCATGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGGCTTGTCCAAGTTGTAGGTACAAGCAAAGTTGCTGAACCTTACAAAATTGACACAAGAACAACCGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCAATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGATGAATGCAAGCGTTTGCGTCAGAGTATAAAATATGGACTCTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCATTGACGCTTCAAGCAATAAGAGTTAATGATTTGCTGGAAGCTGAGATACTGCGGCTGAATCATCTTCGTGACAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATGTGTGGAGGAGTTGCAGCTGCTAAATTCACCAGAGGAACGTCAGCGCAGGCTGCACGAAATTCCGGATGTACACTCTGGAGAGTCCGACGATAATGGTAAAATAAGGTCAAAATATCTCGGATTTGATAGAAGAGAGAGGGGATCTATTTTTCCCAGAATTTGGGATGGTGTCTTGAATGATGTTGGATGCAAAACACAAGACTTGACCAAAACCTGTGATCCAATTGGGAATATGTGCATAATAAAGGATCATATCAACCCTAATGATGCAATTGATGATAACACTAATGTAGTTGTGAAATCAGAAGCATCTAGTATTGCGGTGGACATTTCATCATCGCTTCTCTCTCCAGGGATTGAGCATCCATTTAATGATCCTGTGAATGATAAATCGTGGCATTATCAGGATCCAACTGGGAAAGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGATAACTCTATATTGTTAACTGATGCTCTTAATGGGAAGTGTTCCAAAAATGTGTCATTGCCCTACAACAGCCAATTGCTCTCTTTAGGGGCCAGTGTTACATTGGATAATAAGGAAAATAGTCAGGATGGTGGGAGGAATGCAACAATGACTGAAATTTCTGCAGACAGCCAAATTATTGAGCAGAGCAGGGAACAAAAAGTGGATGATACCTCTACCCAGATTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGTATGACCAGCTGCATCCATACCCTTCACTACCACCAACTTCCATTTCTGAGAAATTGAATGAGAATCCTTCTGATAAATTAAGGGAGGGTCATGGGATTGGGGGAAACTCTGAAGATAATGGAAATTATGGCTCAAACAGGACCTCTGATGGTCAGAGTAATAGTGGGCAAAGTTATCAGAAGCAATCTGATAGTGAAGACAATTCGGGGCAATCTTCTGAACAGAACTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACGTCACCTCCGGATTCTGGGACAAAAACATCACCACATAAGCTGGGATTTGATTCGCATAGTCCCCCTTCCCCTCCACCGTGTAATACATCAACGTGGCAGGCAATCATTGGTGAACCCGATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAGCGTGGTGAGGAATTGACTGATGGTTCTAAAAATGATTGTCTCAGTTTTGCAGAGCTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACAGATGATTTACACTTAGCATCTCAATCCACGGCAACAGAGGAACCATTACGGCAGGCAGATGTCCATCATCATCATCAAAAAATATCTAGGGAGCATCCCTCGAGAAGTTCTGAAGTTGAGGAGGGTACAAAGAACATTGGTTATTCAGGTAATCAATGGGAGTCAGGGTCGGAAAATTCATCCATTGTTCCATGCACTGGAACATTGGGCATGGCTACAGACACCACTTGGAGACTCGGGTCAGAGAATACCCACTTGGGGTGGGGTGGAATGGATCAACGAAATGCAAACATTGGTTGGGGAGTAGGGCAGATGGCAGTGCAAGAGAACAGGAGCTCAAATTCTTACACTTCTGCAGTAACTCCAGGCTTTGTGGATAGCCAAACAAGATATGGCAACGATCGATTTCCTGTGCCCAGAGATCGGGGTTTTCATGGTCACAGTAGAGAATCAGGTTTTGGTAGAGGCAGAACTGCATGGAACAGGCAGCCATTATTCGGTGTTGGAAATGGAGGCTCTTATAGGCCTTTGCCCAGAGGGCAGCGGGTTTGTAAATTTTATGAAAGTGGGTACTGCAAGAAGGGAGCATCCTGCGATTACTTACACCCATGA 3816 0.4258 MEQPKPETAASVGTTAAAEVLSRDLKDSQLVGVPVSLVGDVDMVERNGGCCAPNLEVSVADGAVLKRKRGRPAKGLPKTTPPPRQKEDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCVKRDEAFFRSKAKWNCGWHVCITCQKASHYMCYTCTYSLCKGCIKDADFVCVRENKGLCALCMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPFKGAASMSSRVQTPHELYHLKDDKGSGSENSCIDIESYNLKNKKSKRQPKLPSKGDCFDRIVSGGDTHVSLPECTKWASKELIEFVSHIKNGDTSLLSQFDVQNLLLEYVKKNNLRDPHQKSQIVCDSRLVNLFGKARLGYIEMLMLLESHFLIKENGHAENTFGAGIIDAVPNEEEAIDNYNKQLMLVNDKRCITSRKADVLVPKINPDAYAAIDVHNINLIYLRRSLIESLTDDTEKIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIDTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKECVEELQLLNSPEERQRRLHEIPDVHSGESDDNGKIRSKYLGFDRRERGSIFPRIWDGVLNDVGCKTQDLTKTCDPIGNMCIIKDHINPNDAIDDNTNVVVKSEASSIAVDISSSLLSPGIEHPFNDPVNDKSWHYQDPTGKVQGPFSMLQLYKWNASGHFPPDLRIWRIDEKQDNSILLTDALNGKCSKNVSLPYNSQLLSLGASVTLDNKENSQDGGRNATMTEISADSQIIEQSREQKVDDTSTQINGKDESVRSNGWYDQLHPYPSLPPTSISEKLNENPSDKLREGHGIGGNSEDNGNYGSNRTSDGQSNSGQSYQKQSDSEDNSGQSSEQNWRHPNVNSSSNCLVTTSPPDSGTKTSPHKLGFDSHSPPSPPPCNTSTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRGEELTDGSKNDCLSFAELSPMLDAGKGDALSSTDDLHLASQSTATEEPLRQADVHHHHQKISREHPSRSSEVEEGTKNIGYSGNQWESGSENSSIVPCTGTLGMATDTTWRLGSENTHLGWGGMDQRNANIGWGVGQMAVQENRSSNSYTSAVTPGFVDSQTRYGNDRFPVPRDRGFHGHSRESGFGRGRTAWNRQPLFGVGNGGSYRPLPRGQRVCKFYESGYCKKGASCDYLHP* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1061 1128 - -
Rops1g01578 1271 Pfam Plus-3 domain 455 558 IPR004343 GO:0003677
Rops1g01578 1271 CDD SWIB-MDM2_like 313 388 - -
Rops1g01578 1271 ProSiteProfiles Zinc finger PHD-type profile. 90 156 IPR019787 -
Rops1g01578 1271 ProSiteProfiles Plus3 domain profile. 450 583 IPR004343 GO:0003677
Rops1g01578 1271 CDD GYF 742 797 IPR003169 GO:0005515
Rops1g01578 1271 Gene3D - 744 800 IPR035445 -
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1069 1083 - -
Rops1g01578 1271 FunFam Zinc finger CCCH domain-containing protein 19 83 182 - -
Rops1g01578 1271 SUPERFAMILY FYVE/PHD zinc finger 74 138 IPR011011 -
Rops1g01578 1271 SUPERFAMILY CCCH zinc finger 1246 1270 IPR036855 GO:0046872
Rops1g01578 1271 MobiDBLite consensus disorder prediction 847 861 - -
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1108 1128 - -
Rops1g01578 1271 SUPERFAMILY GYF domain 739 795 IPR035445 -
Rops1g01578 1271 ProSitePatterns Zinc finger PHD-type signature. 93 153 IPR019786 -
Rops1g01578 1271 MobiDBLite consensus disorder prediction 910 980 - -
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1204 1224 - -
Rops1g01578 1271 Gene3D SWIB/MDM2 domain 304 397 IPR036885 -
Rops1g01578 1271 Gene3D - 451 580 IPR036128 GO:0003677
Rops1g01578 1271 Coils Coil 584 604 - -
Rops1g01578 1271 SMART rtf1 450 560 IPR004343 GO:0003677
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1204 1220 - -
Rops1g01578 1271 ProSiteProfiles GYF domain profile. 742 796 IPR003169 GO:0005515
Rops1g01578 1271 SMART PHD_3 92 138 IPR001965 -
Rops1g01578 1271 ProSiteProfiles Zinc finger C3H1-type profile. 1246 1271 IPR000571 GO:0046872
Rops1g01578 1271 SUPERFAMILY Plus3-like 451 579 IPR036128 GO:0003677
Rops1g01578 1271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 181 IPR013083 -
Rops1g01578 1271 Pfam GYF domain 745 786 IPR003169 GO:0005515
Rops1g01578 1271 MobiDBLite consensus disorder prediction 1084 1107 - -
Rops1g01578 1271 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 991 1271 - -
Rops1g01578 1271 SMART swib_2 310 393 IPR019835 -
Rops1g01578 1271 SMART gyf_5 743 798 IPR003169 GO:0005515
Rops1g01578 1271 FunFam Zinc finger CCCH domain-containing protein 19 451 580 - -
Rops1g01578 1271 ProSiteProfiles SWIB/MDM2 domain profile. 307 390 IPR003121 -
Rops1g01578 1271 CDD PHD5_NSD 92 137 - -
Rops1g01578 1271 MobiDBLite consensus disorder prediction 843 994 - -
Rops1g01578 1271 SUPERFAMILY SWIB/MDM2 domain 312 389 IPR036885 -
Rops1g01578 1271 Pfam SWIB/MDM2 domain 315 388 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01578 Rops-Chr1 33876954 33883219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01578 90 173 PHD Transcription Factor Family AT5G36670 34.483 7.97e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops1g01578 Plus-3 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01578 - - aprc:113869503 2123.59