Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01574 ATGCGAACGCTTTGTGACGCTTGTGAGAGTGCGGCTGCTATTGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGCCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGATGTACCACGATGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAATCTAGTCATGCTGAAAACCCAGCTTCACAACCTCTGGAACCAGGTGAGACTAAAAGAGGACAGAATCCACTTCCCATATTAAAAATGGGAGAGAAGCAACAGAATCACAGGATGCCTCTGGTTCCAACCCCAGAATCTGATGCTGATGGGCATGCCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACCAGCATCAAATAATCAGCCATAA 555 0.4432 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQPLEPGETKRGQNPLPILKMGEKQQNHRMPLVPTPESDADGHAKMETKMIDLNMKPNRIHEPASNNQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01574 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Rops1g01574 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Rops1g01574 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Rops1g01574 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Rops1g01574 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Rops1g01574 184 FunFam B-box zinc finger protein 19 2 92 - -
Rops1g01574 184 MobiDBLite consensus disorder prediction 105 157 - -
Rops1g01574 184 CDD Bbox1_BBX-like 56 96 - -
Rops1g01574 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Rops1g01574 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 135 - -
Rops1g01574 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops1g01574 184 CDD Bbox1_BBX-like 4 47 - -
Rops1g01574 184 Gene3D Classic Zinc Finger 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01574 Rops-Chr1 33831554 33834784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01574 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 4.88e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops1g01574 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01574 - - gmx:100780544 374.015