Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01570 ATGCCTGCGTTTTTTCTTCTCCTCATGCTGCTATGCGCACCGTTTTTATCGTGCGCCGATCGCAGCGCCGTAACCGTTTCTGAGATCCAAGCCTTGACGTTGTTCAAGCTCAACCTGCATGATCCTCTCGGAGCTCTCAACGGTTGGGATCCGTCGTCGCCGGCGGCACCGTGTGACTGGCGTGGTGTTGCTTGCAACGACGACCGAGTCACGGAGCTTCGCTTGCCACGTCTTCATCTGGGTGGAAGACTCAGTGACCGTATTTCAGAGCTTCGCATGCTGCGAAAGTTAAGCCTTCGTTCGAACTCATTCAACGGTACGATTCCCTTGTCGCTCTCCAAATGCACGCTCCTACGCTCAGTTTTCTTGCAGGACAACTCATTTACCGGCAACCTTCCGCCGGAGATCGGAAACCTCACCGGCCTTCAGATTCTAAACGTTGCTCAAAACCACCTCTCCGGAAAGGTCTCCGGCGAGCTCCCTCTAGGTCTCAAATACCTCGACCTCTCGTCGAATGTCTTCTCCGGCGAGATTCCGAGCACTGTCGCAAACCTCTCTCAGCTTCAACTCATCAACCTGTCGTACAACCAGTTCTCCGGCGAGATCCGGGCGAGCTTCGGAGAACTTCAGCAGCTTCAATATCTCTGGCTTGACCATAACTTCCTCGGAGGAACCCTACCTGCGGCACTTGCTAATTGCTCTTCGCTGGTGCATCTCAGCGCAGAAGGAAATTCTCTTGGCGGCGTGATTCCGTCGGCAATTTCGGCGCTTCCGAAGCTTCAGGTGATGTCACTCTCCCAGAACAACCTCACTGGTTCCGTTCCAACTTCCGTTTTCTGTAACGTTTCCGTTTACGCACCGTCGCTTCGGATTGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGGCCTGAGAGCAACACGTGTTTCAGTGTTCTTCAGGTTTTGAACATTCAGAACAATAACATACGTGGCACGTTTCCCTTGTGGTTAACCAATGTAACCACGTTGTCACTGCTTGATGTTTCGAGCAATGAACTTTCCGGTGAGATTCCGACGGCAATAGGAAACCTCACCAAGTTGACGGAATTGAAGATGGCTAACAATTCCTTTACCGGTGTTATTCCGGTGGAAATTAAGAAATGCGGGTTCCTTAGTGTTGTTGATTTCGAAGGTAACAATTTCGGTGGAGAAGTTCCTTCGTTTTTTGGTGATATGAATGGTCTGAAGGTGCTGTCCCTTGGTGGGAATCACTTCTCTGGTTCAGTTCCGGTGAATTTTGGTAACCTTTCTTTTCTTGAAACCTTGAGTTTGAGAGGTAATAGCTTAAATGGAAGTATGCCTGATACTATAATGAGATTGAGCAATTTAACAACACTGGACCTTAGTGGAAACAAGCTTACTGGTCAAGTTTTTGCTAGTATTGGGAATCTGAATAGATTAATGGTTCTCAATCTGAGTGGTAATGGTTTCTCTGGAAAAATTCCTGCTAGTTTGGGAAATCTTTTCAGGTTAACTACACTTGACTTGAGCAAACAGAATCTTTCTGGAGAGTTACCATTTGAGCTCTCTGGGCTGCCCAATCTGCAAGTTATAGCTCTGCAGGAGAACAAGTTATCTGGGGATGTACCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGCATTTGAACCTCAGCTCTAATGCTTTTTCTGGGCATATTCCTGAAAACTATGGCTTTCTTCGCTCGTTGACTGTTCTTTCATTGTCTCATAATCACATTACAGGAACAATTCCTTCGGAAATTGGAAATTGCTCTGATATTGAATTTCTTGAGCTTGGATCAAATTCTTTGACAGGTCATATTCCTAGTGATCTCTCTCGCCTCAACCATTTGAAAGTGCTTGATTTGGGTGGTAACAATTTAACTGGGGATATGCCTGGGGATATCTCCAAATGCTCTTCATTAACCACTTTGTTAGTGGATCACAACCATCTTTCAGGTGCCATACCAGGGTCATTGTCAGATCTATCGAACCTAACAATGCTGGATCTCTCTGCTAATAACTTGAGTGGGGAAATTCCGAGCAATTTTTCTATGATCCCTGGTTTGGTGTACTTCAATGTCTCGGGGAACAACCTGGAAGGTGAGATCCCACCCACGTTGGGATCACGTTTCAACAATCCCTCTGTGTTTGCAGATAATCAGGATTTGTGTGGGAGGCCATTGGAAACGAAGTGCGAAGATATAGACAATAGAGGCAGAAAGAAGTTGATTGTGTTGATTATTATCATTGCATCCGGAGCTTGCCTATTAGTATTGTTCTGCTGCTTCTATGTCTTCAGCTTATTGAGATGGCGTAAAAAGCTGAAAGAGAGAGTTTCTGGGGAGAAAAAGAAGAGTCCTGCAAGAGCCAGTTCTGGAGCTAGTGGAGGTCGTGGCAGCAGTGATAGTGGTGGTCCAAAACTTGTGATGTTCAACACCAAAATTACACTTGCTGAAACAATTGAAGCAACGAGACAATTCGATGAAGAGAATGTGCTGAGCAGAGCAAGATACGGATTAGTATTCAAGGCCTGCTACAACGATGGAATGGTCCTTTCCATTCGCAGGCTCCCTGATGGATCACTGGATGAGAACATGTTTAGAAAAGAGGCTGAATCACTGGGCAAAGTGAAGCACCGAAATTTAACAGTTCTCAGAGGTTACTATGCTGGGCCACCTGACATGAGACTCCTAGTCTACGATTACATGCCCAATGGAAACCTAGCAACCCTCCTCCAAGAAGCTTCTCATCAAGATGGCCACGTACTAAATTGGCCAATGCGACACCTCATTGCACTAGGAATTGCCCGTGGTTTAGCCTTCATACACCAATCCTCAATGGTTCATGGGGACGTTAAACCACAGAATGTTTTGTTCGATGCGGACTTCGAAGCTCATTTATCAGATTTTGGGTTAGAAAGGCTAACAATAGCAACTCCAGGTGAAGCCTCGACTTCAACTTCAGTTGGCACATTGGGTTACGTGTCCCCAGAAGCAGTGTTAACTGGCGAAGCCACTAAGGAGTCTGATGTTTACAGCTTTGGCATTGTGTTGTTGGAGCTTCTAACAGGAAAGCGACCTGTGATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTGAAAAAACAACTGCAGAGGGGTCAAATAACAGAGCTATTAGAGCCAGGTTTGCTAGAGTTGGACCCAGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTGGGTTTACTTTGCACAGCACCTGACCCTCTTGATCGACCTACCATGTCCGACATCGTTTTCATGCTCGAAGGTTGCCGTGTCGGTCCAGATATCCCCTCCTCCGCAGATCCCACCTCTCAACCTTCTCCTGCATAA 3390 0.4649 MPAFFLLLMLLCAPFLSCADRSAVTVSEIQALTLFKLNLHDPLGALNGWDPSSPAAPCDWRGVACNDDRVTELRLPRLHLGGRLSDRISELRMLRKLSLRSNSFNGTIPLSLSKCTLLRSVFLQDNSFTGNLPPEIGNLTGLQILNVAQNHLSGKVSGELPLGLKYLDLSSNVFSGEIPSTVANLSQLQLINLSYNQFSGEIRASFGELQQLQYLWLDHNFLGGTLPAALANCSSLVHLSAEGNSLGGVIPSAISALPKLQVMSLSQNNLTGSVPTSVFCNVSVYAPSLRIVQLGFNGFTDFVGPESNTCFSVLQVLNIQNNNIRGTFPLWLTNVTTLSLLDVSSNELSGEIPTAIGNLTKLTELKMANNSFTGVIPVEIKKCGFLSVVDFEGNNFGGEVPSFFGDMNGLKVLSLGGNHFSGSVPVNFGNLSFLETLSLRGNSLNGSMPDTIMRLSNLTTLDLSGNKLTGQVFASIGNLNRLMVLNLSGNGFSGKIPASLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGDVPEGFSSLMSLQHLNLSSNAFSGHIPENYGFLRSLTVLSLSHNHITGTIPSEIGNCSDIEFLELGSNSLTGHIPSDLSRLNHLKVLDLGGNNLTGDMPGDISKCSSLTTLLVDHNHLSGAIPGSLSDLSNLTMLDLSANNLSGEIPSNFSMIPGLVYFNVSGNNLEGEIPPTLGSRFNNPSVFADNQDLCGRPLETKCEDIDNRGRKKLIVLIIIIASGACLLVLFCCFYVFSLLRWRKKLKERVSGEKKKSPARASSGASGGRGSSDSGGPKLVMFNTKITLAETIEATRQFDEENVLSRARYGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSSMVHGDVKPQNVLFDADFEAHLSDFGLERLTIATPGEASTSTSVGTLGYVSPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01570 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 283 471 IPR032675 -
Rops1g01570 1129 PRINTS Leucine-rich repeat signature 671 684 - -
Rops1g01570 1129 PRINTS Leucine-rich repeat signature 458 471 - -
Rops1g01570 1129 SMART LRR_sd22_2 257 284 - -
Rops1g01570 1129 SMART LRR_sd22_2 575 598 - -
Rops1g01570 1129 SMART LRR_sd22_2 623 652 - -
Rops1g01570 1129 SMART LRR_sd22_2 671 694 - -
Rops1g01570 1129 SMART LRR_sd22_2 455 481 - -
Rops1g01570 1129 SMART LRR_sd22_2 335 361 - -
Rops1g01570 1129 SMART LRR_sd22_2 209 235 - -
Rops1g01570 1129 SUPERFAMILY Protein kinase-like (PK-like) 815 1117 IPR011009 -
Rops1g01570 1129 Pfam Protein kinase domain 846 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01570 1129 SUPERFAMILY L domain-like 45 377 - -
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 570 618 IPR032675 -
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 472 569 IPR032675 -
Rops1g01570 1129 FunFam Uncharacterized protein 257 469 - -
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 619 743 IPR032675 -
Rops1g01570 1129 SMART LRR_typ_2 455 475 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 209 233 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 551 573 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 527 550 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 671 694 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 479 503 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 431 454 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 91 115 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 623 647 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 575 599 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 257 281 IPR003591 -
Rops1g01570 1129 SMART LRR_typ_2 407 430 IPR003591 -
Rops1g01570 1129 ProSiteProfiles Protein kinase domain profile. 836 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01570 1129 MobiDBLite consensus disorder prediction 791 815 - -
Rops1g01570 1129 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Rops1g01570 1129 Gene3D Transferase(Phosphotransferase) domain 1 912 1115 - -
Rops1g01570 1129 SMART serkin_6 836 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01570 1129 Gene3D Phosphorylase Kinase; domain 1 813 911 - -
Rops1g01570 1129 SUPERFAMILY RNI-like 341 725 - -
Rops1g01570 1129 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Rops1g01570 1129 Pfam Leucine Rich Repeat 482 503 IPR001611 GO:0005515
Rops1g01570 1129 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 470 745 - -
Rops1g01570 1129 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 25 160 IPR032675 -
Rops1g01570 1129 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1115 - -
Rops1g01570 1129 Pfam Leucine rich repeat 576 636 IPR001611 GO:0005515
Rops1g01570 1129 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Rops1g01570 1129 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Rops1g01570 1129 Pfam Leucine rich repeat 314 371 IPR001611 GO:0005515
Rops1g01570 1129 Pfam Leucine rich repeat 649 708 IPR001611 GO:0005515
Rops1g01570 1129 Gene3D Ribonuclease Inhibitor 161 282 IPR032675 -
Rops1g01570 1129 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 529 1107 - -
Rops1g01570 1129 ProSiteProfiles Leucine-rich repeat profile. 577 599 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01570 Rops-Chr1 33779378 33783892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01570 3 1129 Receptor kinase-like Gene Family AT4G36180 69.974 0.0 1518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Rops1g01570 Pkinase 6.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01570 - - gmx:100795838 1924.06