Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01568 ATGACGTCACCTACTGGGGGGACAACCATCAACCCATGCGCATTTCTGCGGTCCTCCCTCTCCTCCCCTTTTATATTCTTTACAATTCCCTCTCTTTCTCTCTCTCATTATCTTTTCTTCTTCTTCTTCTTCAACTCAACCCATTCATTTTGTCTTCTTCTCTTCATTGCACTTGTCTCTAAACTACTAAACTCATCAGCTTCAGTACCAGTAATTGCTATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACCGATGAAGAACTTGTTGGTTATTATCTGAGGAAGAAAGTAGCTTCTCAGAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCAACAGGTACAAGAACTAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGGAGAGATAAGGCAGTTTATGACAAGATGAAACTAATTGGTATGAGGAAGACTCTTGTTTTCTATAAAGGAAGAGCCCCCAATGGACAGAAATCTGATTGGATCATGCATGAGTATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTTGTGTGCAGAGCATTCAAGAAAAGAACCAATGGCCAAACGAAGACTATTGAAGGATGGGATTCAAGCTACTTCTATGAAGAAGCAAGTGGGGTCAGCACAGTGGTAGATCCAATTGAACTCATCTCAAGGCAGCCTCAGAGTTTTTTAGCTCAAACATTCATGTGTAAGCACGAGATAGAAGCAGATAACTTGAGCTGCATCCATCCAGATCAATTTGTTCAGCTTCCTCAGCTAGAAAGTCCTTCTTTGTCATTAGGAAAGAGGCCAAGCACAGTGTCACTAGTATCAGACAATAATGAAGATGATGATCAAAACAGGTTATTATCCAACAACACCACAAAGAAAGTGACTGATTGGAGAGATCTTGATAAGTTTGTGGCTTCTCAACTGAGTCAAGAAGACAGGCTTGAAACCAATGCACTATCATGCTTTGAAACCAATCCTAGCTCGGATATGGCATTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAAGTTAAGCCCGTTTTTGAATACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1233 0.4225 MTSPTGGTTINPCAFLRSSLSSPFIFFTIPSLSLSHYLFFFFFFNSTHSFCLLLFIALVSKLLNSSASVPVIAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTNGQTKTIEGWDSSYFYEEASGVSTVVDPIELISRQPQSFLAQTFMCKHEIEADNLSCIHPDQFVQLPQLESPSLSLGKRPSTVSLVSDNNEDDDQNRLLSNNTTKKVTDWRDLDKFVASQLSQEDRLETNALSCFETNPSSDMALLLLQSSRDEGNKLSPFLNTSSDCDIGICVFEK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01568 410 Pfam No apical meristem (NAM) protein 83 210 IPR003441 GO:0003677|GO:0006355
Rops1g01568 410 SUPERFAMILY NAC domain 76 231 IPR036093 GO:0003677|GO:0006355
Rops1g01568 410 Gene3D NAC domain 91 235 IPR036093 GO:0003677|GO:0006355
Rops1g01568 410 MobiDBLite consensus disorder prediction 308 331 - -
Rops1g01568 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 79 325 - -
Rops1g01568 410 MobiDBLite consensus disorder prediction 308 322 - -
Rops1g01568 410 ProSiteProfiles NAC domain profile. 82 231 IPR003441 GO:0003677|GO:0006355
Rops1g01568 410 FunFam NAC domain-containing protein 91 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01568 Rops-Chr1 33736335 33740681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01568 75 409 NAC Transcription Factor Family AT2G18060 64.946 9.53e-162 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops1g01568 NAM 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01568 - - aprc:113869508 634.409