Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01565 ATGTCTGCCGCCGGAGAAGGGAACGCTCCCCCCGTTGAACAACCGGTGGAGGAGGTGAAAGCGCCAGAGGAGGCTAAGCCTGTGAAGGAGAAGAAGGCCAGGGTTCCAAAAGAGAAGAAGCCTAAACAGGCCAAAACCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCGTTGTTGGCGTTGAACGAGAAGGGTGGTTCGAGTCCTTATGCCATAGCAAAGTACATGGAGGAGAAGCACAAGTCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGCCTTCAGCTGAAGAACCAAGCTGCGAGAGGGAAACTGGCGAAGATCAAGGCTTCTTACAAGCTAACTGAAGCTGAGAAGGAGGAGAAGAAAGACAGCGCATCCGTTAGGGTCACGAGGGCCACCTCAGAGAAGCAGCAACAGCCGCGCACCAAACGAACAAGAGCTGTAACCGCCGTTGCTTCTCCGAAGAGTAAGAAAACTGAGGTGGTGGCTAAGAAGGTTGGGAAGAAGAAGACGAAGAAGGTGTCTTCTACTCCTGCGAAGCCCAAACAACCCAAGTCCATTAGGTCTCCTTCTAAGAGGGCAAGGAAAGCTACGGTTGCTACTGCATGA 624 0.516 MSAAGEGNAPPVEQPVEEVKAPEEAKPVKEKKARVPKEKKPKQAKTKTASHPPYFQMIKEALLALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLAKIKASYKLTEAEKEEKKDSASVRVTRATSEKQQQPRTKRTRAVTAVASPKSKKTEVVAKKVGKKKTKKVSSTPAKPKQPKSIRSPSKRARKATVATA* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01565 207 MobiDBLite consensus disorder prediction 119 207 - -
Rops1g01565 207 SUPERFAMILY "Winged helix" DNA-binding domain 47 129 IPR036390 -
Rops1g01565 207 Pfam linker histone H1 and H5 family 51 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01565 207 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops1g01565 207 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops1g01565 207 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops1g01565 207 MobiDBLite consensus disorder prediction 119 134 - -
Rops1g01565 207 PANTHER HISTONE H1 21 197 - -
Rops1g01565 207 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01565 207 MobiDBLite consensus disorder prediction 1 53 - -
Rops1g01565 207 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops1g01565 207 MobiDBLite consensus disorder prediction 17 34 - -
Rops1g01565 207 Gene3D - 45 146 IPR036388 -
Rops1g01565 207 MobiDBLite consensus disorder prediction 167 181 - -
Rops1g01565 207 CDD H15 48 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01565 Rops-Chr1 33677891 33678799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01565 35 118 Single Myb Histone (SMH) Gene Family AT1G72740 39.286 8.92e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01565 K11275 - gmx:100500169 194.897