Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01562 ATGAAGCGAGCAAGGAAATCGAACAGGGTTTCGTGGGCTCCTGGACCTATTCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGTCCTTCAAAAGTTGGCCAGAAATCTCAAGACCATCTTCAAGCAAAGACATCGTCAATGTTGCCCTCCAGTACTGATGAATATGATGATTTACCACCTGGTTTTGAAGGCAATCATTTCCTAAACCAATCAAAGGCTGAACTATCTAACATTTCTCAGATTAAATGGCAATGCCCTCCTGCGTTTGCTTTCAGTTATCATTGGCGCGTTGCAGCTGGTGAAGAAAGTAAAGAGAAAGAATATCAGAAGAAAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGTCATTCTGCAATTCCTCCTAGCCCTTCTGTTTATTTTGAGGTTGAAGAGGAAGATTATGATGATAACCTCACTCCTCTCGTCCCAATCATTCCTATTGAGGAGGAAGAACCTATGGATCTTAAACCTGAAGTTGCACTCACAAAACATGCGGACACTCCATCCAAGTTGCAGTCACAAAACCTGCCACAGTATACACCAGCAGAAACATCTCCCATAAATTCACAATTCAAACCCTCTTCTACTACTGTTCCCTCATCTTCCTGTGAAATGCCCGCAACTGGGACATCTCCTTGTTCAGAGGCAGATTTAGCTGCAGCTGTCGTAGCAGCCATCTTGAAAAGCAATGAGCAAGGAAGCTTGATTGATATGGATCTTCTCCTGAGAATATTTAATGACCCAATAATGATTGAGAGATTAGTCAACGAACATCGAACTGCAGCCGCTACTGTTTGTGCATCCTCAAATACTATGGGTATATCCACTTCTGAATTGAAACCTGTTATTTCATCAGTTCCATTGTCTAAGCCTACATCTGAGGCTGCAGCTTCTGGAAATAGACCTAATAGCACAATGGGTTTATTACCTGCTTCTGGGCCTAAGCAAGCAACTCAATCAGAGTCACCGTGGACGCCCACACCTGATAAGCCAGCAACTCCATCAGTTCCTTTATTTAGGCCAGTATCTGGTAAATCTGCACCTACCCCTCATATGCATAGACCTGCCAACAAAAATGCTCCTCACATGTCAAATGAAGTGCTGCTGCCCACTTTAAATACCCAGTCTCCTCAACAAGACACGATTCTGTCATCTGGGGTAAAGCGAGCAGCATCATTGGCTTCTATTTCCTCCAGTGAATTGAGCATGGTGGCATTGCCTTCTGCTTCTTTGAACTTGCATGCAGTTACAAACCATGTGCAATCCACTACCAGGACAGTGCCTTATCAATCAGGTACTGGTTCGGCATTTGCTGTTAAGGATGCCAACTATTACAAGAATCTTATTAGGCAACACGGCGCAGATAAGCAAGATATACTGGATTCACAGATAGGTATCGGTAGTAATAATTTCCAGGATTTGAAATCGATACGTAACATCATTAAACCGGGGGAAATGGTATTCAGCACTCAGAAACCTTGCATATACTTTAAAAGCTCAAGAGGGTGCAGGAATGGTTCCAATTGCCCTTATAAGCATGATATGTCAGTTCAGTTTGGAGCTGGTGGTAATGTCCTAATGGCCCAAAGTGCGAAAAGAATGAAATTAGGACCAGAAATTAAGGGGTGTACATAA 1662 0.4278 MKRARKSNRVSWAPGPILCQVKLFLSEDCPSKVGQKSQDHLQAKTSSMLPSSTDEYDDLPPGFEGNHFLNQSKAELSNISQIKWQCPPAFAFSYHWRVAAGEESKEKEYQKKREMRVLEAVYPRHSAIPPSPSVYFEVEEEDYDDNLTPLVPIIPIEEEEPMDLKPEVALTKHADTPSKLQSQNLPQYTPAETSPINSQFKPSSTTVPSSSCEMPATGTSPCSEADLAAAVVAAILKSNEQGSLIDMDLLLRIFNDPIMIERLVNEHRTAAATVCASSNTMGISTSELKPVISSVPLSKPTSEAAASGNRPNSTMGLLPASGPKQATQSESPWTPTPDKPATPSVPLFRPVSGKSAPTPHMHRPANKNAPHMSNEVLLPTLNTQSPQQDTILSSGVKRAASLASISSSELSMVALPSASLNLHAVTNHVQSTTRTVPYQSGTGSAFAVKDANYYKNLIRQHGADKQDILDSQIGIGSNNFQDLKSIRNIIKPGEMVFSTQKPCIYFKSSRGCRNGSNCPYKHDMSVQFGAGGNVLMAQSAKRMKLGPEIKGCT* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01562 553 MobiDBLite consensus disorder prediction 294 363 - -
Rops1g01562 553 MobiDBLite consensus disorder prediction 294 335 - -
Rops1g01562 553 ProSiteProfiles Zinc finger C3H1-type profile. 497 525 IPR000571 GO:0046872
Rops1g01562 553 MobiDBLite consensus disorder prediction 33 53 - -
Rops1g01562 553 MobiDBLite consensus disorder prediction 33 62 - -
Rops1g01562 553 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 546 - -
Rops1g01562 553 MobiDBLite consensus disorder prediction 175 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01562 Rops-Chr1 33628016 33633306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01562 81 152 Homeobox Transcription Factor Family AT4G02560 43.056 6.33e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops1g01562 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01562 - - adu:107488052 595.504