LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g01562	ATGAAGCGAGCAAGGAAATCGAACAGGGTTTCGTGGGCTCCTGGACCTATTCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGTCCTTCAAAAGTTGGCCAGAAATCTCAAGACCATCTTCAAGCAAAGACATCGTCAATGTTGCCCTCCAGTACTGATGAATATGATGATTTACCACCTGGTTTTGAAGGCAATCATTTCCTAAACCAATCAAAGGCTGAACTATCTAACATTTCTCAGATTAAATGGCAATGCCCTCCTGCGTTTGCTTTCAGTTATCATTGGCGCGTTGCAGCTGGTGAAGAAAGTAAAGAGAAAGAATATCAGAAGAAAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGTCATTCTGCAATTCCTCCTAGCCCTTCTGTTTATTTTGAGGTTGAAGAGGAAGATTATGATGATAACCTCACTCCTCTCGTCCCAATCATTCCTATTGAGGAGGAAGAACCTATGGATCTTAAACCTGAAGTTGCACTCACAAAACATGCGGACACTCCATCCAAGTTGCAGTCACAAAACCTGCCACAGTATACACCAGCAGAAACATCTCCCATAAATTCACAATTCAAACCCTCTTCTACTACTGTTCCCTCATCTTCCTGTGAAATGCCCGCAACTGGGACATCTCCTTGTTCAGAGGCAGATTTAGCTGCAGCTGTCGTAGCAGCCATCTTGAAAAGCAATGAGCAAGGAAGCTTGATTGATATGGATCTTCTCCTGAGAATATTTAATGACCCAATAATGATTGAGAGATTAGTCAACGAACATCGAACTGCAGCCGCTACTGTTTGTGCATCCTCAAATACTATGGGTATATCCACTTCTGAATTGAAACCTGTTATTTCATCAGTTCCATTGTCTAAGCCTACATCTGAGGCTGCAGCTTCTGGAAATAGACCTAATAGCACAATGGGTTTATTACCTGCTTCTGGGCCTAAGCAAGCAACTCAATCAGAGTCACCGTGGACGCCCACACCTGATAAGCCAGCAACTCCATCAGTTCCTTTATTTAGGCCAGTATCTGGTAAATCTGCACCTACCCCTCATATGCATAGACCTGCCAACAAAAATGCTCCTCACATGTCAAATGAAGTGCTGCTGCCCACTTTAAATACCCAGTCTCCTCAACAAGACACGATTCTGTCATCTGGGGTAAAGCGAGCAGCATCATTGGCTTCTATTTCCTCCAGTGAATTGAGCATGGTGGCATTGCCTTCTGCTTCTTTGAACTTGCATGCAGTTACAAACCATGTGCAATCCACTACCAGGACAGTGCCTTATCAATCAGGTACTGGTTCGGCATTTGCTGTTAAGGATGCCAACTATTACAAGAATCTTATTAGGCAACACGGCGCAGATAAGCAAGATATACTGGATTCACAGATAGGTATCGGTAGTAATAATTTCCAGGATTTGAAATCGATACGTAACATCATTAAACCGGGGGAAATGGTATTCAGCACTCAGAAACCTTGCATATACTTTAAAAGCTCAAGAGGGTGCAGGAATGGTTCCAATTGCCCTTATAAGCATGATATGTCAGTTCAGTTTGGAGCTGGTGGTAATGTCCTAATGGCCCAAAGTGCGAAAAGAATGAAATTAGGACCAGAAATTAAGGGGTGTACATAA	1662	0.4278	MKRARKSNRVSWAPGPILCQVKLFLSEDCPSKVGQKSQDHLQAKTSSMLPSSTDEYDDLPPGFEGNHFLNQSKAELSNISQIKWQCPPAFAFSYHWRVAAGEESKEKEYQKKREMRVLEAVYPRHSAIPPSPSVYFEVEEEDYDDNLTPLVPIIPIEEEEPMDLKPEVALTKHADTPSKLQSQNLPQYTPAETSPINSQFKPSSTTVPSSSCEMPATGTSPCSEADLAAAVVAAILKSNEQGSLIDMDLLLRIFNDPIMIERLVNEHRTAAATVCASSNTMGISTSELKPVISSVPLSKPTSEAAASGNRPNSTMGLLPASGPKQATQSESPWTPTPDKPATPSVPLFRPVSGKSAPTPHMHRPANKNAPHMSNEVLLPTLNTQSPQQDTILSSGVKRAASLASISSSELSMVALPSASLNLHAVTNHVQSTTRTVPYQSGTGSAFAVKDANYYKNLIRQHGADKQDILDSQIGIGSNNFQDLKSIRNIIKPGEMVFSTQKPCIYFKSSRGCRNGSNCPYKHDMSVQFGAGGNVLMAQSAKRMKLGPEIKGCT*	554

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops1g01562	553	MobiDBLite	consensus disorder prediction	294	363	-	-
Rops1g01562	553	MobiDBLite	consensus disorder prediction	294	335	-	-
Rops1g01562	553	ProSiteProfiles	Zinc finger C3H1-type profile.	497	525	IPR000571	GO:0046872
Rops1g01562	553	MobiDBLite	consensus disorder prediction	33	53	-	-
Rops1g01562	553	MobiDBLite	consensus disorder prediction	33	62	-	-
Rops1g01562	553	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED	2	546	-	-
Rops1g01562	553	MobiDBLite	consensus disorder prediction	175	217	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g01562	Rops-Chr1	33628016	33633306	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g01562	81	152	Homeobox Transcription Factor Family	AT4G02560	43.056	6.33e-08	53.9

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Rops1g01562		None	None	None

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g01562	-		-	adu:107488052	595.504

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