Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01561 ATGAAGCGGGCAAGGAAATCAAACAGGGTTTCGTGGGCTGCTGGACCTAAGCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGGCCTTCAAAAGTTGGCCAAATATCTCAAGATCATCTTCAAGCAAAGACATCGTCAATGTTGCCCTCCAGTACTGATGGATATGATGATTTACCACCTGGGTTTGAAGGCAATCATTTCCTGAACCAATCAAAGGCTGAACTATCTCACATTTCTCAGATTAAATGGCAATGCCCTCCTGCGTTTGCTTTCAGTTATCACTGGCACGTTGCAGCCGGCGAAGAAAGTAAGGAGAAAGAATATCAGAAGATAAGAGAAAGGAGAGTGCTTGAAGCAGTTTATCCTCGTCTTTCTGCCATTCCTCCCAGCCCTTCTGTTTCTTTCGAGGTAGAGAAGGAAGATTATGATGATAACCTCACTGCTCGCATCCCAATCATTCCTATCGAGGAAGAAGAATCTATGGATCTTAAACCTGAAGGTGCACCCACAAAACATGCGGACACTCCCTCCAAGTTGCAGTCACAAACCTTGCCACAGTATATACCAGCAGCAACATCTCACATGAATTCACAATGTGAACCCTCCTCTACTACTGTTCCCTCATCTTCCTGTGAAATGCCCGCAACTGGGAAGTCTCCTTGTTTGGAGGGAGATTTAGCTGCAGCTTCTGCTGTGGTAGAAGCCATCATGAAAAGCAATGAGCAAGGAAGCTTGATTGATATAGATCTACTCCTGAGAATATTTAATGACCCAACAATGATTGAGAGGTTAATTAACGAATGTAGAACTGCAGCTGCCACTGTCAGTGCATCTTCAAATGCCGTGGGCATACCCACGTCTGAATTGAAACCTGTTACTTCATCGGTTCCATTGCCTAAACTTACACCTGCGGCGGCAGCTTCTGGAAATACACCTACAAGTACAATGGGTTTATTACCTACTTCCATGCCAAAGCAAGCAACTCCTCAATCAGAGTCATTGTTGATGCCCACACCTGAGAAGCCAGCAATTCCATCTGTTTCAGTGTTGAGTTCTACTTTTGATAAGCCAGCAACTCCTATGTTCAGGCCTTTATCTGGTAAATCAGCAGCAACTCACTCAGTTACACTGCCTACACCTCCATCTCTATCTGCACCTACCCCTCATATGCATAGACCTTCCAACAAAAATATTCCTCATATGTCAAATGGAGTGCTGCCCACTTTAAATACCCAGTCTCCTCAACAAGATACTGTTCTGTCATCTGGTGTAAAGCGAGCAGCATCATTGGTTTCTATTTCCTCCAGTGAATTGAGCACGGTGGTGTTGCCTTCTGCTTCTCTGAACTTGTATGGAGTTGAAAACCAGGTGCGATCCACTGCTAGTACAGTGCCTTATCAATCAGGTACTGGTTCAGCATTTGCTGTGAAGGACGCCAACTATTATAAGAATCTTATTAGGCAACACGGTGCAGATAAGCAAGATATGCAGGGCTCAAAAATCAGTATCCGTAATAATAATTTCCAGGATTTGAAATCGGTACACAACATCATTAAGCCGGGGGAAATGATATTCAAAATTCAGAAACCTTGCATATATTTTAATAGCTCAAGAGGGTGCAGGAATGGTTCCAATTGCCCCTATAAGCATGATATGTCAGTTCAGTTTGGAGCTGGCAATGTCCTAGTGGCCCAAAGTGCGAAAAGAATGAAACTAGGACCAGAAATTAAGGGGTGTACATAA 1746 0.4364 MKRARKSNRVSWAAGPKLCQVKLFLSEDWPSKVGQISQDHLQAKTSSMLPSSTDGYDDLPPGFEGNHFLNQSKAELSHISQIKWQCPPAFAFSYHWHVAAGEESKEKEYQKIRERRVLEAVYPRLSAIPPSPSVSFEVEKEDYDDNLTARIPIIPIEEEESMDLKPEGAPTKHADTPSKLQSQTLPQYIPAATSHMNSQCEPSSTTVPSSSCEMPATGKSPCLEGDLAAASAVVEAIMKSNEQGSLIDIDLLLRIFNDPTMIERLINECRTAAATVSASSNAVGIPTSELKPVTSSVPLPKLTPAAAASGNTPTSTMGLLPTSMPKQATPQSESLLMPTPEKPAIPSVSVLSSTFDKPATPMFRPLSGKSAATHSVTLPTPPSLSAPTPHMHRPSNKNIPHMSNGVLPTLNTQSPQQDTVLSSGVKRAASLVSISSSELSTVVLPSASLNLYGVENQVRSTASTVPYQSGTGSAFAVKDANYYKNLIRQHGADKQDMQGSKISIRNNNFQDLKSVHNIIKPGEMIFKIQKPCIYFNSSRGCRNGSNCPYKHDMSVQFGAGNVLVAQSAKRMKLGPEIKGCT* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01561 581 ProSiteProfiles Zinc finger C3H1-type profile. 526 554 IPR000571 GO:0046872
Rops1g01561 581 MobiDBLite consensus disorder prediction 307 334 - -
Rops1g01561 581 MobiDBLite consensus disorder prediction 303 334 - -
Rops1g01561 581 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01561 Rops-Chr1 33604497 33610547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01561 81 152 Homeobox Transcription Factor Family AT4G02560 44.444 1.56e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops1g01561 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01561 - - adu:107488052 620.542