Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01558 ATGAGGCCCATCAAAGCCAATCTGGGCTTATCCAGTCCATTCTCATTCGAGCCTGATAAAAGGCCTGCTAGGTCAAAGACAAAAACGGCGTCGCCTGTGCTATATATTATAACTGAAGCAGAAACCCTAATCTCTGAAGTATCCTTCTTCCATTTCCATTGGGTGCGGCAGAGGAAAAGGAGATTAATCGTCATGGGTAGGGTAATTAGGGCACAACGTAAGGGTGCTGGGTCGGTGTTCAAGTCCCACACCCACCACCGTAAGGGTCCAGCAAGGTTCAGAAGCCTTGACTTCGGTGAACGAAACGGTTACCTGAAAGGGGTGGTCACCGACGTCATTCACGACCCTGGTCGTGGTGCCCCTCTTGCAAAGGTCGCTTTCCGACACCCTTTTAGATACAAGAAGCAGAGCGAGCTTTTTGTTGCAGCTGAAGGTATTTACACCGGCCAGTTCATTTACTGTGGCAAGAAAGCCACCCTTGTCGTTGGTAATGTCTTGCCACTTAGATCCATTCCAGAAGGTGCTGTCATTTGCAACGTCGAACACCATGTTGGTGACCGTGGTGTTTTCGCTAGGGCTTCTGGTGACTATGCTATTGTTATCAGCCACAACCCTGATAACGATACATCTAGGATCAAGCTTCCATCTGGGGCAAAGAAGATTGTTCCAAGTGGGTGCAGGGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCTCTTCTTAAGGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGGAATTGCTGGCCTAAGGTACGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCATGCTAGTACCGTCAGGCGTGATGCTCCTCCTGGCCAAAAGGTTGGTCTCATTGCTGCTAGGAGAACCGGTCGTCTTAGGGGACAAGCTGCCGCAACTGCTTCTAAAGCCGATAAGACTACTTGA 978 0.499 MRPIKANLGLSSPFSFEPDKRPARSKTKTASPVLYIITEAETLISEVSFFHFHWVRQRKRRLIVMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVAFRHPFRYKKQSELFVAAEGIYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATASKADKTT* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01558 325 PANTHER RIBOSOMAL PROTEIN L2 60 320 IPR002171 GO:0003735|GO:0005840|GO:0006412
Rops1g01558 325 Gene3D - 65 150 IPR012340 -
Rops1g01558 325 FunFam 60S ribosomal protein L8 154 233 - -
Rops1g01558 325 Pfam Ribosomal Proteins L2, RNA binding domain 77 154 IPR022666 GO:0003735|GO:0005840|GO:0006412
Rops1g01558 325 Gene3D Ribosomal protein L2, domain 3 234 311 IPR014726 -
Rops1g01558 325 SMART Ribosomal_L2_C_2 160 295 IPR022669 GO:0003735|GO:0005840|GO:0006412
Rops1g01558 325 FunFam 60S ribosomal protein L2 65 150 - -
Rops1g01558 325 Hamap 50S ribosomal protein L2 [rplB]. 65 310 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Rops1g01558 325 SMART Ribosomal_L2_2 75 154 IPR002171 GO:0003735|GO:0005840|GO:0006412
Rops1g01558 325 Gene3D - 154 233 IPR014722 -
Rops1g01558 325 MobiDBLite consensus disorder prediction 274 294 - -
Rops1g01558 325 FunFam 60S ribosomal protein L2 234 311 - -
Rops1g01558 325 ProSitePatterns Ribosomal protein L2 signature. 261 272 IPR022671 GO:0003735|GO:0005840|GO:0006412
Rops1g01558 325 SUPERFAMILY Translation proteins SH3-like domain 163 310 IPR008991 -
Rops1g01558 325 SUPERFAMILY Nucleic acid-binding proteins 63 161 IPR012340 -
Rops1g01558 325 Pfam Ribosomal Proteins L2, C-terminal domain 162 289 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01558 Rops-Chr1 33588454 33589921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01558 65 322 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 94.574 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01558 K02938 - gmx:100798311 511.916