Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01555 ATGGAACCTCAACAACCACAACAACAACAACAGACCCAACAACCAAACGAGGATAGTGGCAGTGGAAAAGGGGGGTTTCTGAGCAGGCAAAGTAGTACACGGTGGACTCCCACAACCGACCAGATTAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCTGAACAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGAAAGAATGTCTTTTATTGGTTCCAAAACCACAAAGCTCGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAAGAGGGGCAACTAATGGTGCTTGGAAACCTGAAGAACACATTCACACCAAGTATTCTAACATATCAGCTACTGGGATCTCTTCAGCTTCATCTTCTTCTGCACATGAGATGGTTACTGTAGGCCAGATAGGAAATTATGGGTATGGATCTATGCCCATGGAGAAGAGTTTTAGGGACTGCTCAATATCAGCTGGAGGTAGCAGTGGTCATGTTGGAAGTGCCAGAAACCACCACAACTTGGGATGGGTTGGTGTGGATCCATATTCCTCAGCCTATGCCAATTTCTTTGACAAAATAAGGCCAACTGAAGAAATCATGGAAGAAGAACAAGAAGATGGTACTCCTGAGATTGAAACCCTCCCTCTATTCCCTCTGCATGGTGAGGACATCCATGGCTATTGCAACCACAAGTCTAATTCTTCTAACTATGATGGTAGTTGGTATCACAATGAAGAAGGGTTCAAGAATGGTTCTCGTACTTCCTTGGAGCTCAGTCTCAACTCCTACACTCGCAGATCTCCTGATTATGCTTGA 846 0.4433 MEPQQPQQQQQTQQPNEDSGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRGATNGAWKPEEHIHTKYSNISATGISSASSSSAHEMVTVGQIGNYGYGSMPMEKSFRDCSISAGGSSGHVGSARNHHNLGWVGVDPYSSAYANFFDKIRPTEEIMEEEQEDGTPEIETLPLFPLHGEDIHGYCNHKSNSSNYDGSWYHNEEGFKNGSRTSLELSLNSYTRRSPDYA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01555 281 Pfam Homeodomain 32 93 IPR001356 GO:0003677
Rops1g01555 281 SUPERFAMILY Homeodomain-like 26 99 IPR009057 -
Rops1g01555 281 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g01555 281 Gene3D - 27 93 - -
Rops1g01555 281 ProSiteProfiles 'Homeobox' domain profile. 28 94 IPR001356 GO:0003677
Rops1g01555 281 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 271 IPR044555 GO:0003700|GO:0099402
Rops1g01555 281 CDD homeodomain 33 95 IPR001356 GO:0003677
Rops1g01555 281 SMART HOX_1 30 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01555 Rops-Chr1 33551807 33553318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01555 26 233 Wox Gene Family AT2G17950 44.223 6.51e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops1g01555 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01555 - - vra:106776674 426.402