Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01547 ATGGGTATCTGTTTTTCCTCCACCAAGGTCAGCGGTTCTAACAGCAACAACATCGACGCCGCCAATCGGAAACGGAGCTCGAAACAGCAGCAACCCGCGACGGCGGTGCAGAAGCAACAAGCGTCAACCGGTCAACGTCAGAGAGCGTCGGAAGAGGCACAGAAGAAGCAGTCGAAGAATTCGCAGCAGCAACAGCAAAGGCCCAAAGAGAAAACGACGTCGCGGCGACAAGGGGGGCATTTACCCTGTGGAAAGAGAACGGATTTCGGTTACGAGAAGGACTTTGATAAGAGATTCTCCCTCGGTAAATTGTTGGGGCATGGCCAATTCGGTTACACCTATGTTGGAACTGATAAAAGGAATGGGGATCGTGTGGCTGTGAAGAGACTCGAGAAGAGCAAGATGGTTCTTCCCATAGCTGTTGAGGATGTTAAGAGAGAGGTCAAGATATTGAAAGAACTTGCAGGCCATGAAAATGTGGTTCAGTTCTATCATGCTTTTGAGGATGATTCATACGTGTACATAGTTATGGAGTTATGCGAGGGTGGAGAATTGCTAGATCGGATATTGGCCAAGAAGGACAGCCGATATACTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAGCCAGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAAAGGTTTCAAGATATTGTTGGAAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACCGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGTACTGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCACGGGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTGGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCAAGCACACTTAATGAAGATGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATCGATGTGGACAAAAATGGTTCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCGAAAGATCTCCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGTAACACAGATGGGTTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTGCATCAACTGGAGGAACATGACTCGGAGAAGTGGCAGCTACGGTCACAGTCTGCTTTTGAGAAATTTGACTTGGATAAGGATGGCTATATTACTCCAGATGAACTCAGAATGCATACTGGTTTAAGAGGCTCCATTGATCCATTGCTTGAGGAAGCTGATATTGACAAAGATGGAAAAATTAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATTTCTCGAAATGTCACAAGCCCAACTCAGCGTTTACGGAAGATCTAA 1680 0.4417 MGICFSSTKVSGSNSNNIDAANRKRSSKQQQPATAVQKQQASTGQRQRASEEAQKKQSKNSQQQQQRPKEKTTSRRQGGHLPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGTDKRNGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELAGHENVVQFYHAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISTAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEDELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQLRSQSAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASISRNVTSPTQRLRKI* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01547 559 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Rops1g01547 559 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Rops1g01547 559 Gene3D - 400 469 - -
Rops1g01547 559 SUPERFAMILY Protein kinase-like (PK-like) 96 371 IPR011009 -
Rops1g01547 559 MobiDBLite consensus disorder prediction 1 48 - -
Rops1g01547 559 Gene3D - 380 539 - -
Rops1g01547 559 Gene3D Transferase(Phosphotransferase) domain 1 182 379 - -
Rops1g01547 559 FunFam Calcium-dependent protein kinase 28 400 469 - -
Rops1g01547 559 Pfam EF-hand domain pair 488 540 IPR002048 GO:0005509
Rops1g01547 559 Pfam EF-hand domain pair 405 468 IPR002048 GO:0005509
Rops1g01547 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Rops1g01547 559 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Rops1g01547 559 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Rops1g01547 559 SUPERFAMILY EF-hand 391 546 IPR011992 -
Rops1g01547 559 Gene3D Phosphorylase Kinase; domain 1 95 181 - -
Rops1g01547 559 CDD STKc_CAMK 98 358 - -
Rops1g01547 559 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Rops1g01547 559 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Rops1g01547 559 SMART efh_1 515 543 IPR002048 GO:0005509
Rops1g01547 559 SMART efh_1 406 434 IPR002048 GO:0005509
Rops1g01547 559 SMART efh_1 443 471 IPR002048 GO:0005509
Rops1g01547 559 SMART efh_1 485 513 IPR002048 GO:0005509
Rops1g01547 559 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Rops1g01547 559 ProSiteProfiles Protein kinase domain profile. 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01547 559 FunFam CDPK-related kinase 1 92 184 - -
Rops1g01547 559 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Rops1g01547 559 MobiDBLite consensus disorder prediction 1 87 - -
Rops1g01547 559 PANTHER SERINE/THREONINE-PROTEIN KINASE 71 528 - -
Rops1g01547 559 FunFam calcium-dependent protein kinase 28-like 185 378 - -
Rops1g01547 559 SMART serkin_6 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01547 559 Pfam Protein kinase domain 101 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01547 559 ProSiteProfiles EF-hand calcium-binding domain profile. 519 546 IPR002048 GO:0005509
Rops1g01547 559 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01547 Rops-Chr1 33368631 33374136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01547 1 556 EF-hand Containing Proteins AT2G17890 75.218 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops1g01547 Pkinase 8.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01547 K13412 - gmx:100805954 957.592