Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01545 ATGATTTCATTAGCGTCTTTTCCATCCTCTCTCTCTGCCGCGAACCTCACCGGTAACGCCGTGGCTTCTCCGCCGTGCCGCGTCAGATCCCGGCCAATAGTCGCCTTCGCCACCGCCACGGCCACCGCCGATGCTCGCTCTACTTGGACGGAGCAACCGAGGCCTTCGTATCTGAACTCCTCTCTCTACGAGACCCTCGGAATCCCCGCCGGCGCCTCCAATCAAGAGATCAAGGCGGCGTACCGGCGACTCGCTAGGGTTTCCCACCCGGACGTGTCGGCGATCGACCGGAAAAACTCGTCGGCGGACGAGTTCATGAAGATTCACGCCGCGTACTCCACCCTTTCGGATCCTGTCAAGCGCGCCAATTACGATCGGAGCCTATTCCGGCGACAACGGCCGTTGTCGACGGCGGCGATGTTTTCCGGCTACTCGAGTCGGAAATGGGAAACGGATCAGTGCTGGTAG 468 0.6068 MISLASFPSSLSAANLTGNAVASPPCRVRSRPIVAFATATATADARSTWTEQPRPSYLNSSLYETLGIPAGASNQEIKAAYRRLARVSHPDVSAIDRKNSSADEFMKIHAAYSTLSDPVKRANYDRSLFRRQRPLSTAAMFSGYSSRKWETDQCW* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01545 155 Pfam DnaJ domain 62 125 IPR001623 -
Rops1g01545 155 PRINTS DnaJ domain signature 63 81 IPR001623 -
Rops1g01545 155 PRINTS DnaJ domain signature 100 120 IPR001623 -
Rops1g01545 155 PRINTS DnaJ domain signature 81 96 IPR001623 -
Rops1g01545 155 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Rops1g01545 155 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 16 135 - -
Rops1g01545 155 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
Rops1g01545 155 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Rops1g01545 155 CDD DnaJ 63 117 IPR001623 -
Rops1g01545 155 Gene3D DnaJ domain 48 143 IPR036869 -
Rops1g01545 155 SMART dnaj_3 60 120 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01545 Rops-Chr1 33334386 33334853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01545 63 125 C2H2 Transcription Factor Family AT1G74250 41.791 1.04e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01545 - - gmx:100800959 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01545 1 33334386 33334853 Rops1g01545 1 33334386 33334853 ECH