Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01544 ATGATTTCATTAGCGTCTTATCCATCCTCTCTCTCTGGCGCGAACCTCACCGGTAACGCCGTGGCTTCTCGGCCGTGCCGCGTCAGATCCCGGCCAATAGTCGCCTTCGCCACCGCCACGGCTACCGCCGATGCTCGCTCTACTTGGACGGAGCAACCGAGGCCTTCGTATCTGAACTCCTCTCTCTACGAGACCCTCGGAATCCCCGCCGGCGCCTCCAATCAAGAGATCAAGGCGGCGTACCGGCGACTCGCTAGGGTTTCCCACCCGGACGTGTCGGCGATCGACCGGAAAAATTCGTCGGCGGACGAGTTCATGAAGATTCACGCCGCGTACTCCACCCTTTCGGACCCTGTCAAGCGCGCCAATTACGATCGGAGCCTATTCCGGCGACAACGGCCGTTGTCAACGGCGGCGATGTTTTCCGGCTACTCGAGTCGGAACTGGGAAACAGATCAGTGCTGGTAG 468 0.6026 MISLASYPSSLSGANLTGNAVASRPCRVRSRPIVAFATATATADARSTWTEQPRPSYLNSSLYETLGIPAGASNQEIKAAYRRLARVSHPDVSAIDRKNSSADEFMKIHAAYSTLSDPVKRANYDRSLFRRQRPLSTAAMFSGYSSRNWETDQCW* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01544 155 Pfam DnaJ domain 62 125 IPR001623 -
Rops1g01544 155 Gene3D DnaJ domain 48 143 IPR036869 -
Rops1g01544 155 PRINTS DnaJ domain signature 63 81 IPR001623 -
Rops1g01544 155 PRINTS DnaJ domain signature 100 120 IPR001623 -
Rops1g01544 155 PRINTS DnaJ domain signature 81 96 IPR001623 -
Rops1g01544 155 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Rops1g01544 155 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Rops1g01544 155 SUPERFAMILY Chaperone J-domain 61 131 IPR036869 -
Rops1g01544 155 CDD DnaJ 63 117 IPR001623 -
Rops1g01544 155 SMART dnaj_3 60 120 IPR001623 -
Rops1g01544 155 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 23 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01544 Rops-Chr1 33296785 33297252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01544 63 125 C2H2 Transcription Factor Family AT1G74250 41.791 1.25e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01544 - - gmx:100800959 255.758