Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01538 ATGCATCTCTTTCCCTTCATCTCTGTCTTCATTTTCACCCTATTGATCAGCAACTTCTCTATCATTCTGGGACAGCAACCTTATATTGGTTTAGCCACATATGCATGCCCTCGAAAGGGTAACTCAAAATCTATCCGTGGTTACACTTGTAATGGTGCAAATCAAAGTTGCCAAGCTTACCTTACCTTCAGATCTCAACCCATTTACAGTTCTGTTTCCACAATATCAGCTTTGTTGGGTTCTGACCCATCCCAGCTTGCTGAAATAAACTCAGTTTCCCTGAATGACACCTTTGAATCAAACAAGTTGGTGATTGTTCCTGTCAAGTGCTCCTGTGCAGGTGAGTATTATCAAGCAAACACATCCTATGTATTCCAGAATACAGACACCTACTTTTTGATTGCCAGCAAAACTTTTGAGGGTCTCTCAACTTGTCAAGCTTTGATGCATGAAAACCGCAATCCTAGAGATATATACCCTGGTAGAGAACTCACAGTTCCTCTTAGATGTGCTTGTCCCACAAAGAATCAAACTGAGAAAGGTGTCAGGTACCTCTTGAGTTACCTTGTAAACTGGGGTGATTCTGTTTCACTTGTTAGTGAGAGATTTGGTGTCAGAACCAACACCACTCTTGAAGCTAATACCCTTACTATGACAAAAGCCATCATCTATCCCTTTACCACACTTCTAGTGCCACTTCATGATAAACCTTCAAGTTCTCAAACCCTTTCGCCAGCTAGACCATCTCCCTCATCCTCACCTTCATCTTCTTCCACAAATCAAAGATCAAGCAAAACTTGGGTGTATGTAGTTGTTGGAGTAGTTGTTGGAGTTATCGCCTTAATATTAGTTCTCTTTGCTGTCATTTTCTTCACACGTTATCACAAGGGTAAAAAGAAAGATGATTCGGTGATTGTGTCCAAGAGTTTTGAGGCTATTGAGAAACCACAAGGGAAGGAAATTGAGAAAGAAGATGGAAAAAACTTGTCAGAGATCATATCTGGAATAGCTCAATCATTCAAAGTGTATGGTTTTGAGGAACTAGAGCGTGCAACAGATAATTTTAGACCAAGTTGTTGGATTAAAGGATCTGTTTACCGTGGTGTTATTAAAGGTGATTTGGCTGCAATTAAGAAGACAGAAGGTGATGTGTCAAAAGAGATACAAATACTGAACAAAGCCAACCATTCTAATATTATACGCCTCTCTGGGGTCAGCTTCAATGAGGGTCATTGGTACCTTGTTTATGAGTATGCAGCTAATGGAGCCTTGTGCGATTGGATCTACTTCAACAACGTGGATGGGAAGTTTTTGAATTGGAAGCAAAGAATTCAGATTGCATTGGATGTAGCCACAGGAGTTGACCATCTTCATAGTTTCACTTCTCCTCCTCATATCCATAAAGATCTAAAGATAAGTAACATTCTTTTGGACAATGATTTCAGGGCAAAGGTTGCAAACTTAAGCCTTGCAAGGTCCATGGAAGGAGTGGATGAGCAATTTCTTGCAACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTATTGTATCTACAAAGCTTGATGTTTATGCATTTGGGGTGTTGATGTTGGAAATCCTCACTGGAAAAGAGGTTGCTGCTATGTTAGATGAAGATAATAAGAATTTGTCAAATGTTTTAAGTGCCATACTTGATGAGGAAAATGGCAAAGAGAGGTTGAAGGAGTTTATGGATCCTTCTCTGCAAGAAAATTATCCATTAAAACTTGCTATGTTTATGGTTGAAATGAGTGATAATTGTATAAAGAAAGATCCAGCAAGTCGCCCTGCCATGAATGAGATTGTAACATCTCTGTCCAGAACCCTGAACTCTTCATTGAGTTGGGAAAATTCAGAGAACGTTTCAGGATACCAGTGTTTTAGCAACATCTCTTGA 1938 0.3973 MHLFPFISVFIFTLLISNFSIILGQQPYIGLATYACPRKGNSKSIRGYTCNGANQSCQAYLTFRSQPIYSSVSTISALLGSDPSQLAEINSVSLNDTFESNKLVIVPVKCSCAGEYYQANTSYVFQNTDTYFLIASKTFEGLSTCQALMHENRNPRDIYPGRELTVPLRCACPTKNQTEKGVRYLLSYLVNWGDSVSLVSERFGVRTNTTLEANTLTMTKAIIYPFTTLLVPLHDKPSSSQTLSPARPSPSSSPSSSSTNQRSSKTWVYVVVGVVVGVIALILVLFAVIFFTRYHKGKKKDDSVIVSKSFEAIEKPQGKEIEKEDGKNLSEIISGIAQSFKVYGFEELERATDNFRPSCWIKGSVYRGVIKGDLAAIKKTEGDVSKEIQILNKANHSNIIRLSGVSFNEGHWYLVYEYAANGALCDWIYFNNVDGKFLNWKQRIQIALDVATGVDHLHSFTSPPHIHKDLKISNILLDNDFRAKVANLSLARSMEGVDEQFLATRHIVGTRGYMAPEYLENGIVSTKLDVYAFGVLMLEILTGKEVAAMLDEDNKNLSNVLSAILDEENGKERLKEFMDPSLQENYPLKLAMFMVEMSDNCIKKDPASRPAMNEIVTSLSRTLNSSLSWENSENVSGYQCFSNIS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01538 645 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 632 - -
Rops1g01538 645 SMART serkin_6 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01538 645 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Rops1g01538 645 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Rops1g01538 645 SMART LysM_2 187 232 IPR018392 -
Rops1g01538 645 SMART LysM_2 122 167 IPR018392 -
Rops1g01538 645 MobiDBLite consensus disorder prediction 237 261 - -
Rops1g01538 645 FunFam PTI1-like tyrosine-protein kinase 3 419 633 - -
Rops1g01538 645 Pfam Protein kinase domain 378 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01538 645 Gene3D Transferase(Phosphotransferase) domain 1 420 639 - -
Rops1g01538 645 SUPERFAMILY Protein kinase-like (PK-like) 338 619 IPR011009 -
Rops1g01538 645 ProSiteProfiles Protein kinase domain profile. 299 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01538 645 Pfam LysM domain 188 232 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01538 Rops-Chr1 33142429 33144594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01538 1 632 Receptor kinase-like Gene Family AT2G23770 42.746 1.43e-167 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops1g01538 Pkinase 2.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01538 - - gmx:100815842 928.317