Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01534 ATGCTGTCATTATTGCCTCTGTGGTTTTCTAACTCTTGCTTTGTAGGACAGGATGTTGGACAAAGGCCTGATGCTAAAACGTTGCTATCTCACCCTTGGATTCAAAATTGTGGATGTGCCCTGTTCTCTTTGTCATGGTGGGACATTAAGGCACATTGGAGGGTGATGCAATCTGTTGATCAAATTAAAGAGGACTGCATTGTAAAGTATATCATGGTTGTTCTCATAGCCAGCTATGGAAAATGGCATGGGTACGTGGCATTGTTACCCAAAGGACAAAAGAGGGCAACTGGGCAGGAATATTATGAATTTCTTCATGAGTTCATGACTACTGTGAAGCAAAACTATGGGGAAAAAATTCTTGTGCAGTTTGAAGATTTTGGAAATCACAATGCTTTTGAGTTGCTCGCTAAATATGGCACAACTCATCTTGTTTTCAATAATGACTTACAGGGGACTGCATCTGTTGTTCTAGCAGGAGCTGTAGCAGCCCTGAAGCTCATTGGTGGTGTTTTTTCCCAGTTTTGGTGA 531 0.4162 MLSLLPLWFSNSCFVGQDVGQRPDAKTLLSHPWIQNCGCALFSLSWWDIKAHWRVMQSVDQIKEDCIVKYIMVVLIASYGKWHGYVALLPKGQKRATGQEYYEFLHEFMTTVKQNYGEKILVQFEDFGNHNAFELLAKYGTTHLVFNNDLQGTASVVLAGAVAALKLIGGVFSQFW* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01534 176 PRINTS Malic enzyme signature 146 162 IPR001891 GO:0004470|GO:0004471
Rops1g01534 176 PRINTS Malic enzyme signature 121 139 IPR001891 GO:0004470|GO:0004471
Rops1g01534 176 PANTHER MALIC ENZYME-RELATED 93 173 - -
Rops1g01534 176 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 92 149 IPR046346 -
Rops1g01534 176 SMART malic_2 38 140 IPR012301 GO:0004471
Rops1g01534 176 Gene3D - 87 173 IPR037062 GO:0004471
Rops1g01534 176 Pfam Malic enzyme, N-terminal domain 93 139 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01534 Rops-Chr1 33089448 33092328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01534 9 43 MAP Kinase Kinase Kinase AT3G13530 62.857 3.88e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01534 K00029 - gmx:100782096 141.739