Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01525 ATGGCAGAAAACAAAGAAGAAACCTGTTCTGAAAGATCTTTATGTTCACCTGGTTCAAGCTCCCAAATGGGTAATAATAACTACAGATACGTGTTTGATAGATTATGTGGTTGTGCCATTTCATGGAAGAAAAGCAACACACCAAAAGGTAGAAGAATTTTCCACAGGGATGTGGAAAAAGAAGCATTCCAGTATGCAAGTAGTCATTGTCTCTCATCATACTACAGTGTGTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGGCTGCTCACTATACTTACATGGCACTTCACAAAGATTTATACAAGAAAATCACTTAATAGCTTGGCATATGGTCTACGTTATGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTTAAATTGTCTCAGTATGTGATCAGACGTTATAGCAACCCTGCTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGTCACTGTTTGTTAGTAGGAAAGCTCTCAACTCAATAACTATCAATTATAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTGAAGGACAACAATACATTTTACATCTACTCTGATCTTTCAAATTACTCCATGGTTGCCAGCAGCTCTAAAGAGATCAGTTCCCTTTCAACTCATCAAGCTTGGGATGAAAAAGCCATTCATGGTAACTTTTCTGCAATTTGGTACCGTGAACCACTTGACCCTATCAGTGGGGAGAAGATTGGAAAAGCTATGAAAATTGCACCAGAAGACTTAATCAATATAGCTGGCCTTTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCAGTGAGCAAGTATACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCAGATAATAAGAGTATTATGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGGGAACTAGTTGAGTTGCACAGTGGCCATATGTACTTGACTTCACAGGAAGGTTACTTACTTGCAACTTCCACAAGTGCCCCTCTACTGTCAAATTCAACAAAGCCTCCCAAGCTTAAGATGGCTGTTAACTGTGAAAATGAAGTGATAAGACAGGGAGCAGAGTGGTTAGAAAGAACTTATGGGAACAGTTTTCCTTCAAGCCATGAGGTTCATGTAGAGAATGCCAAGCTAGGCCGCCAGCAATATTACATTGATTCATTCTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTTCAAAACGTTGGTCATTCTGATATCTGCATCCTTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTGTCAAAGGAAATGAATCTAAGAGCAGAATTGATAAATCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTTATATCTGATGACTGTCTCACAAATGAACAATACTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTTTGCTTCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCAGTTCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCTAGGGTGGTTCAAATATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTCCATCGGGTCATGTTATTCTGCGAGGATGGTGTGAAAACCTAAATTCTTGCAGTGACAGTCCGAATTTTGCTCTTGACCAGAAGAAATCACGGAGTTTACAAAAGATCAGAGACAAGCCACATGCAAACCACACTAAGAGAACATCCATAAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAAGACACAGGCAGTGGTATTGACCCAAGCAAATGGGATTCAGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTTTCAAAAAAGAGGGACCAGGAACATTGATGAGATTAAGCTTGCACCTCAGTGCACCCATGGATGTCACAGAAGAACATTGTGCAGTAGATTTGACAGATAACGGCCTAGTGGTACTGCTTGCACTGCACGGCAATATGAGTCGATTAATTACATCCAAGTGGTTACAGAAAAAGGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACTCAAATTTTGAGGCAACTCTTTCATGCAACAAGTTCAGTCCATAATGACTTTGATGCACACTATCCAGGAAATGAGGGATTGAAATCTAAACTACTAAACATTCAAGATATGAGGAACCCGGTTTTTGTCATTATTGTGGATATTGGTCTACTTGACTTGAGCACAGATATATGGAAGGAACAGTTTAACTTCCTTCACAGGTACTTTGGGAGAGCAAAGTTTGTGTGGATGTTAAATCATGACACCTCCAATACCATAAAGATGGAGCTCCGTAGGAAAGGGCATTTACTAATGGTTAACAAACCCCTTTACAAAGCAAAAATGATTCATGTTTTGGAAGCTGTCATAAAGGAGAGAAATCTTGAACTACAAAAGAAAAATATGACGGCTGCAAGGACTATAATGAAAGTGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTGGCTCTGATGATTCTGACATATCTGAAATGGGTGGATCTAATCCTGTTAGTGCCAATGGAGATAAACCAATTGGAGAGATAGCCAGGTCCAATTCTTCATCACCACAGCAGATGAGAAACTGCTTAGTTAGATTAACCACTGAAAATGGATATTTGGAAGAAAATAATTTGAGGAAAGAAGAATCTTGTCATAGTAGCCCCAAATCCAATTATGCCACTGAAGACAGTCAACCTCAACCACTTTCAACTAAAGAACCATCATCCTCTCCAACAGAAGCTCAGGATGAAGATTCTGAATGTGAGGAAACACAAAGGGTCACCAGCTCAAGTAAAACAGTAAATGATAAGAAATCTCTCGAGGGCCTAAGGATTTTGCTTGCAGAAGATACACCAGTTCTTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCTGTTGTTATTGCTGTAAGTGATGGACAACAGGCAGTAGATATTCTCAATTGTGCTGAAGATTGTAGAAGGGAGTCTTTCCAGAAGGAAAGAAACATGAGATCTCAAACAGAGATTTTGTCTTGCCATCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAACAATAAGGAAATCAGAAGAGGGAACAGGCTTGCACATTCCCATTGTTGCTCTTACAGCCCATGCAATGTCATGTGATGAAGCCAAATGCCTGCAGGTGGGTATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGAAGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCTTGA 3747 0.4014 MAENKEETCSERSLCSPGSSSQMGNNNYRYVFDRLCGCAISWKKSNTPKGRRIFHRDVEKEAFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTRKSLNSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPANQAEQVELYEAMRAVTWSLFVSRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASSSKEISSLSTHQAWDEKAIHGNFSAIWYREPLDPISGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDSDNKSIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLSNSTKPPKLKMAVNCENEVIRQGAEWLERTYGNSFPSSHEVHVENAKLGRQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHVILRGWCENLNSCSDSPNFALDQKKSRSLQKIRDKPHANHTKRTSIRDNKVILWFEVEDTGSGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVFKKEGPGTLMRLSLHLSAPMDVTEEHCAVDLTDNGLVVLLALHGNMSRLITSKWLQKKGVCTMEASEWNGLTQILRQLFHATSSVHNDFDAHYPGNEGLKSKLLNIQDMRNPVFVIIVDIGLLDLSTDIWKEQFNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHLLMVNKPLYKAKMIHVLEAVIKERNLELQKKNMTAARTIMKVGDLHEFLEIDSTHFDAAGSDDSDISEMGGSNPVSANGDKPIGEIARSNSSSPQQMRNCLVRLTTENGYLEENNLRKEESCHSSPKSNYATEDSQPQPLSTKEPSSSPTEAQDEDSECEETQRVTSSSKTVNDKKSLEGLRILLAEDTPVLQRVATIMLEKMGAVVIAVSDGQQAVDILNCAEDCRRESFQKERNMRSQTEILSCHPYDLILMDCQMPKMDGYEATKTIRKSEEGTGLHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKKMVSTILSLTKRTS* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01525 1248 SMART HKATPase_4 619 771 IPR003594 -
Rops1g01525 1248 Gene3D - 1078 1246 - -
Rops1g01525 1248 MobiDBLite consensus disorder prediction 1032 1093 - -
Rops1g01525 1248 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
Rops1g01525 1248 FunFam Histidine kinase 1-like protein 494 573 - -
Rops1g01525 1248 Gene3D - 494 573 - -
Rops1g01525 1248 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Rops1g01525 1248 CDD REC_hyHK_CKI1_RcsC-like 1103 1240 - -
Rops1g01525 1248 Gene3D - 574 772 IPR036890 -
Rops1g01525 1248 SMART HisKA_10 506 572 IPR003661 GO:0000155|GO:0007165
Rops1g01525 1248 MobiDBLite consensus disorder prediction 1045 1068 - -
Rops1g01525 1248 SUPERFAMILY CheY-like 1099 1245 IPR011006 -
Rops1g01525 1248 Pfam Response regulator receiver domain 1103 1240 IPR001789 GO:0000160
Rops1g01525 1248 SMART REC_2 1101 1240 IPR001789 GO:0000160
Rops1g01525 1248 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 769 IPR003594 -
Rops1g01525 1248 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
Rops1g01525 1248 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g01525 1248 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 767 IPR036890 -
Rops1g01525 1248 MobiDBLite consensus disorder prediction 979 1017 - -
Rops1g01525 1248 ProSiteProfiles Response regulatory domain profile. 1102 1244 IPR001789 GO:0000160
Rops1g01525 1248 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 776 - -
Rops1g01525 1248 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310|GO:0016772
Rops1g01525 1248 PRINTS Bacterial sensor protein C-terminal signature 755 768 IPR004358 GO:0016310|GO:0016772
Rops1g01525 1248 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310|GO:0016772
Rops1g01525 1248 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310|GO:0016772
Rops1g01525 1248 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01525 Rops-Chr1 32931181 32938071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01525 29 1245 Histidine Kinase Gene Family AT2G17820 63.932 0.0 1581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops1g01525 HATPase_c 6.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01525 - - gmx:100814068 2118.58