Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01524 ATGGCAAAACCTGTGGTCGTTAATGCTGAGTATCTAAAGGAAATTGAGAAGGCTCGTCGAGACCTTCGTGCTCTTATCTCCAACAAAAACTGCGCTCCTCTCATGCTTCGATTAGCGTGGCACGATGCTGGTACCTACGATGTTAAAACCCGAACAGGAGGCCCTAATGGTTCTATTAGGAATGAACAAGAGTTGAATCATGCTGCAAACAAGGGGTTGAAAACAGCAGTTGAATTATGTGAGGAAGTGAAGGCCAAACATCCAAAGGTTTCATATGCAGATCTTTACCAGCTAGCTGGTGTTGTGGCAGTGGAGGTCACTGGGGGTCCAACAATTGACTTTGTTCCTGGAAGAAAGGATTCACTGGAATCTCCACCAGAAGGGCGCCTTCCAGATGCCAAACTAGGGGCATCGCATTTAAGGGAAATCTTTTATCGCATGGGTCTAAGTGATAGAGACATCGTGGCTCTATCTGGAGGCCACACTTTGGGTAAGGCACATAAAGAACGCTCTGGCTTTGAAGGTCAATGGACAAGAGACCCTTTGAAGTTTGATAACTCCTATTTTGTGGAACTATTGAAGGCGGAATCAAAAGATTTATTGAAGCTTCCCACGGATAAGGTTTTAGTCGAAGATCCAGTGTTCGGCAAGTACGTTGACTTGTATGCAAAGCATGAGGATGCTTTCTTAGCTGATTATGCAACCACACACAAGAAACTCTCAGAGCTAGGATTCAAGCCCAATAATCGTTCCATATTGGTCAAGGGAGTTGTAGGATTCGTTATTGCCTCAACCGTGGTGATCCTAGGTTACTTACTTGAACTGAACAGAAAGACCAATTGA 843 0.446 MAKPVVVNAEYLKEIEKARRDLRALISNKNCAPLMLRLAWHDAGTYDVKTRTGGPNGSIRNEQELNHAANKGLKTAVELCEEVKAKHPKVSYADLYQLAGVVAVEVTGGPTIDFVPGRKDSLESPPEGRLPDAKLGASHLREIFYRMGLSDRDIVALSGGHTLGKAHKERSGFEGQWTRDPLKFDNSYFVELLKAESKDLLKLPTDKVLVEDPVFGKYVDLYAKHEDAFLADYATTHKKLSELGFKPNNRSILVKGVVGFVIASTVVILGYLLELNRKTN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01524 280 PRINTS Haem peroxidase superfamily signature 32 46 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Haem peroxidase superfamily signature 153 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Haem peroxidase superfamily signature 90 107 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Haem peroxidase superfamily signature 108 120 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 FunFam L-ascorbate peroxidase, cytosolic 131 237 - -
Rops1g01524 280 Pfam Peroxidase 19 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 ProSitePatterns Peroxidases active site signature. 32 43 IPR019794 GO:0004601
Rops1g01524 280 Gene3D Peroxidase, domain 2 131 237 - -
Rops1g01524 280 Gene3D - 18 244 - -
Rops1g01524 280 SUPERFAMILY Heme-dependent peroxidases 13 249 IPR010255 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 Coils Coil 8 28 - -
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 89 107 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 169 193 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 221 245 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 147 168 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 129 146 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 50 60 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 64 88 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 108 120 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 32 47 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 PRINTS Plant ascorbate peroxidase signature 11 31 IPR002207 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 CDD ascorbate_peroxidase 4 248 - -
Rops1g01524 280 ProSitePatterns Peroxidases proximal heme-ligand signature. 153 163 IPR019793 -
Rops1g01524 280 ProSiteProfiles Plant heme peroxidase family profile. 73 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Rops1g01524 280 FunFam Cytosolic ascorbate peroxidase 18 137 - -
Rops1g01524 280 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 8 248 IPR044831 GO:0004601|GO:0034599
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01524 Rops-Chr1 32926981 32929206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01524 73 246 Peroxidase AT4G17690 34.286 1.18e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01524 K00434 - gmx:100806101 472.241