Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01508 ATGACTCTCAAAGGATTGGTTTCACTTGTCTTCAATTTTATTGGTCTAGCAGAGGGACCAAGGAACATGGATGCCCCTTTACCATACCTGCTATCCAATCCTATTGTCCCACAGAAGATCATCATGCAGCAATCATCTGAATCTGCAGCATCATCCAATTTCATGGAGAATAGTGAGGTTGGTTTGTGTTGTGTGTGCTTGTCGAGGTTGAATGACAAAGATGAAATCCGTGTCCTTCCTTGCTTGCACAAATTCCATAAGATTTGTGTTAATAAATGGCTAAAGGGTCATCACAAAACATGTCCACTCTGCCGTTTCTCAATGGGAACTGAGGAGAAGTCTCATCGTGCTGAAATGTTCACTGAAGAGATGCTAATATGGTTTTCTTCTTTCCATATAACTGGTATGTGA 411 0.4112 MTLKGLVSLVFNFIGLAEGPRNMDAPLPYLLSNPIVPQKIIMQQSSESAASSNFMENSEVGLCCVCLSRLNDKDEIRVLPCLHKFHKICVNKWLKGHHKTCPLCRFSMGTEEKSHRAEMFTEEMLIWFSSFHITGM* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01508 136 Pfam Ring finger domain 63 105 IPR001841 -
Rops1g01508 136 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Rops1g01508 136 CDD RING-H2_PA-TM-RING 63 105 - -
Rops1g01508 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 111 IPR013083 -
Rops1g01508 136 SUPERFAMILY RING/U-box 62 110 - -
Rops1g01508 136 PANTHER TARGET OF ERK KINASE MPK-1 45 113 - -
Rops1g01508 136 SMART ring_2 63 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01508 Rops-Chr1 32721307 32721941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01508 35 105 C3H Transcription Factor Family AT5G45290 40.278 2.56e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01508 - - gmx:100527665 206.838