Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01499 ATGGAGTTTTTGCCAAATCCATGCCCTTTGCGTTCCTCTTTGTTCTGTTCCTTCGGGAATCTCGTCGAAAGGGTCAAACAGATTGATACCATCGCCATATCTTCCATCGTTGGGAGCATTTTCTCTGCGATCTTGACCTTTTGCTTCGCTTCAGTGGGAACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATTTCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCAATCTGATGAATCTGGGATTGGGTGTCTCTTATACTTGATTGATGTTATTGCTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCTGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACTGGTGGTGCCAAAGGTTTATCAGGAGATTTGGTTGAAAATATCCCAAAAATTAAAATTACTACTGACAACATTATTGATGCATCTGCTGAAAGAGTTTCTTGTTCTGTTTGCCTCCAGGACTTTCTGCTTGGAGAGACAGTTAGAAGCTTACCTCATTGTCACCACATGTTTCACCTACCTTGCATAGATAGGTGGCTCTTCAGGCACGGTTCTTGCCCATTATGCAGAAGGGATATGTAA 708 0.4435 MEFLPNPCPLRSSLFCSFGNLVERVKQIDTIAISSIVGSIFSAILTFCFASVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDTGGAKGLSGDLVENIPKIKITTDNIIDASAERVSCSVCLQDFLLGETVRSLPHCHHMFHLPCIDRWLFRHGSCPLCRRDM* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01499 235 SMART ring_2 190 231 IPR001841 -
Rops1g01499 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Rops1g01499 235 Pfam Ring finger domain 189 232 IPR001841 -
Rops1g01499 235 SUPERFAMILY RING/U-box 189 234 - -
Rops1g01499 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Rops1g01499 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Rops1g01499 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Rops1g01499 235 CDD RING-H2_NIPL1-like 189 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01499 Rops-Chr1 32653023 32654893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01499 20 235 C3H Transcription Factor Family AT5G66070 74.537 4.82e-115 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01499 - - gmx:100807641 420.239