Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01493 ATGGCGGAAACCGGTGGTGAAGGCAACAAAAACGGCGTCGTTCATCTCCATGGTGACCTCGACTTGAAAATCATCGAGGCTCGTCGGTTACCTAACATGGACCTCTTTTCTGAGCATCTCCGCCGTTGCGTCACCGGCTGTGACACTATCAAATTCCATTCCCCAGACGACACCAACCGCCACACCCACCACCACCGTAGAAAAATAATCACCAGCGACCCATACGTCACCGTTTTGGTGCCTCAAGCAACCGTCGCACGCACGCAAGTCCTTAAGAACTCACAAAACCCCGTTTGGAACGAGCACTTCAACATTCCCCTGGCACACCCCGTTGTAGATTTAGAATTCCGAGTCAAAGACGACGACGTTTTCGGCGCGGAAGTCATGGGAACGGTTAAGATTCCGGCGACGAAGATTATATCCGGCGAGTTAATCTCCGGCTGGTTCCCTATCATCAGCTCCTCCGGAAAGCCACCGAAGCCGGACACCGCACTGCGCATCGAGATGAAGTTCACGCCGGTGGAAGAGAACCCTCTCTACCGTCACGGCATCGCGGCGGATCCCAATCACAAGGGAGTGAGGGACACGTATTTTCCGGTGAGGAAAGGAAGCTCTGTGAGATTATACCAAGATGCACATTGCCCTGATGGGATGTTACCGGAGATTAAGCTCGAAGGTGGAAAGGTCTATAGGCACGAGAAGTGTTGGGAAGATATATGCTATGCCATTTCAGAGGCTCATCACATGGTGTATCTTGTGGGTTGGTCAATTTATCATAAGGTGAAACTTGTTAGGGAACCTTCTAGACCTTTGCCACGAGGTGGAGATTTGACACTTGGGGACTTGCTTAAGTATAAGTCTGAAGAAGGGGTGAGAGTTTTGTTGTTGGTTTGGGATGATAAGACTTCACATGATAAGCTTTTCTTCAAAACGACAGGAGTAATGCAGACCCATGATGAGGAAACCAGGAAATTTTTCAAACATTCTTCTGTTATGTGTGTTTTGTCGCCTCGGTATGCTAGTAACAAGATTAGCTTCTTGAAGCAACAGGTTGTTGGAACCGTCTTCACACACCATCAAAAATGTGTTATTGTAGACACACAGGCAGCTGGTAATTACCGAAAGATAACTGCTTTTATAGGAGGTCTTGATATATGTGATGGCCGCTATGACACACCTGAGCATCGGCTTTTTCGTGACCTTGACACTGTATTTTCTGGTGATTTCCACAATCCTACAATTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATAGATGGGCCTGCTGCATATGATGTCCTTGTTAATTTTGAGCAGCGGTGGAGAAAAGCAACAAAGTGGAAAGAATTTGCAATTCTTTTAAAAAAATCTTCTCAATGGAATGATGATGCTTTATTAAGAACAGAACGTATCTCGTGGATATTGAGTCCTTCTCTTTCTGCCTCTAAGAGTAATTATACAATTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAAGGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAGAATGTCAATGTTGCTGTTTCCCAGCATCTTATCTGTGCTAAAAATTTGGTTATAGATAAAAGCATTCAAACAGGATACATTCAAGCGATCAGATCTGCTCAACATTTTATTTATATTGAAAACCAATACTTTATCGGATCATCATATGCATGGCCATCTTACAAAGACGCAGGGGCTGATAATCTCATCCCGATGGAATTGGCACTGAAAATTGCTAATAAAATCAGAGCTAAGGAGAGATTTGCTGTTTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAATCTGGGGCTGTGCAAGAAATCCTCTTTTGGCAGTGCCAGACAATGCAAACGATGTATGATGTTGTTGCTAGAGAATTGAAATCAATGCAACTTAATGATGTGCACCCTCAAGATTACCTCAACTTCTATTGCCTTGGTAATCGAGAACACTTTAACGAAGAAAGCTCAAGCTCAAATGGTGCACCGGTCTCTGGAGCATATAAATACCGTCGAAATATGATTTATGTGCATTCCAAGGGGATGATAGTTGATGATGAGTATGTTATACTGGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACATGGTCTGCGAGGAAAAGGCATCCATGTGGCCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCAAGTTAGATGAAACTTTTGAGGAACCAGAGAGATTAGAGTGTGTGTGTAAAGTGAATGAAATTGCAGAAAATAATTGGAAAATATATGCTTCAGAAGATTTCTCACTGCTGCAGGGACATCTTCTTAAGTATCCTGTACAGATAGATATCGATGGGAAGGTTAGCTCCCTACCTGGGAATGAGAATTTCCCAGATGCTGGTGGTAATATATTAGGGTGTCACTCCACAACAATTCCAGATATCCTAACCACATAA 2568 0.4377 MAETGGEGNKNGVVHLHGDLDLKIIEARRLPNMDLFSEHLRRCVTGCDTIKFHSPDDTNRHTHHHRRKIITSDPYVTVLVPQATVARTQVLKNSQNPVWNEHFNIPLAHPVVDLEFRVKDDDVFGAEVMGTVKIPATKIISGELISGWFPIISSSGKPPKPDTALRIEMKFTPVEENPLYRHGIAADPNHKGVRDTYFPVRKGSSVRLYQDAHCPDGMLPEIKLEGGKVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPSRPLPRGGDLTLGDLLKYKSEEGVRVLLLVWDDKTSHDKLFFKTTGVMQTHDEETRKFFKHSSVMCVLSPRYASNKISFLKQQVVGTVFTHHQKCVIVDTQAAGNYRKITAFIGGLDICDGRYDTPEHRLFRDLDTVFSGDFHNPTIPSGTRAPRQPWHDLHCRIDGPAAYDVLVNFEQRWRKATKWKEFAILLKKSSQWNDDALLRTERISWILSPSLSASKSNYTIVPEDDPLVWVSKEDDPENWHVQIFRSIDSGSLKGFPKNVNVAVSQHLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIANKIRAKERFAVYIVLPMWPEGDPKSGAVQEILFWQCQTMQTMYDVVARELKSMQLNDVHPQDYLNFYCLGNREHFNEESSSSNGAPVSGAYKYRRNMIYVHSKGMIVDDEYVILGSANINQRSMAGTKDTEIAMGAYQPHYTWSARKRHPCGQIYGYRMSLWGEHLGKLDETFEEPERLECVCKVNEIAENNWKIYASEDFSLLQGHLLKYPVQIDIDGKVSSLPGNENFPDAGGNILGCHSTTIPDILTT* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01493 855 CDD C2_plant_PLD 12 172 - -
Rops1g01493 855 SUPERFAMILY Phospholipase D/nuclease 196 458 - -
Rops1g01493 855 PANTHER PHOSPHOLIPASE D 10 843 IPR015679 -
Rops1g01493 855 PIRSF PLD_plant 6 855 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops1g01493 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 354 389 IPR001736 GO:0003824
Rops1g01493 855 SMART C2_3c 19 148 IPR000008 -
Rops1g01493 855 Gene3D Endonuclease Chain A 512 748 - -
Rops1g01493 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 700 727 IPR001736 GO:0003824
Rops1g01493 855 Gene3D Endonuclease Chain A 223 476 - -
Rops1g01493 855 FunFam Phospholipase D delta 226 470 - -
Rops1g01493 855 Pfam C2 domain 18 151 IPR000008 -
Rops1g01493 855 ProSiteProfiles C2 domain profile. 1 149 IPR000008 -
Rops1g01493 855 Pfam Phospholipase D Active site motif 354 389 IPR001736 GO:0003824
Rops1g01493 855 Pfam Phospholipase D Active site motif 700 727 IPR001736 GO:0003824
Rops1g01493 855 Gene3D C2 domain 16 180 IPR035892 -
Rops1g01493 855 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 16 174 IPR035892 -
Rops1g01493 855 SMART pld_4 354 389 IPR001736 GO:0003824
Rops1g01493 855 SMART pld_4 700 727 IPR001736 GO:0003824
Rops1g01493 855 SUPERFAMILY Phospholipase D/nuclease 551 785 - -
Rops1g01493 855 Pfam Phospholipase D C terminal 774 844 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01493 Rops-Chr1 32564416 32572157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01493 1 691 Phospholipase D Gene Family (Wang group) AT4G35790 71.124 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01493 K01115 - gmx:100801787 1505.73