Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01490 ATGGCGGATTCTCCAGCAAGAAGGAATTCAAGATCCCCTTCTCCATGGAGGGCTCAGTCAAGATCCAGATCAAGGTCTAGGTCTAGGCCCAGGTCTCGGTCAAGATCTCTTGAAAAGCAGAGGCCAAGATCCCGCTCAAGAAGTCGTGGCAGATCAAGATCAAGAAGTCATGACAGAAATGAGATTAGAAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTCGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTGGTGGAGCCTCGTACACGTATTTCTCGTGGTTTTGCTTTTATTACTATGGAAACTGTTGAGGATGCAAACCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGATCACGAAGAAAGCGGGCAAGAACTCCTACACCTGGACACTATCTTGGTCTGAAAAGTACTAGAGATTATGGACATCGTGGTGACCGTGGAAGGTATCGAGGTGGATCTGGTCGAGATGATTATCCATATCGTAGGTCTCCAAGGCGCTCACCATATAGAGGTGGCAGGGATTATTCACCAAGGCACTCGCCATATGGTGGAAGATCTAGGAGGGATAGGTCCAGGTCACTTCCTTATTCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA 711 0.4726 MADSPARRNSRSPSPWRAQSRSRSRSRSRPRSRSRSLEKQRPRSRSRSRGRSRSRSHDRNEIRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMETVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGHRGDRGRYRGGSGRDDYPYRRSPRRSPYRGGRDYSPRHSPYGGRSRRDRSRSLPYSPYGSPDRRYARGSR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01490 236 MobiDBLite consensus disorder prediction 1 21 - -
Rops1g01490 236 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 151 - -
Rops1g01490 236 SUPERFAMILY RNA-binding domain, RBD 63 177 IPR035979 GO:0003676
Rops1g01490 236 CDD RRM_SF 69 141 - -
Rops1g01490 236 MobiDBLite consensus disorder prediction 1 68 - -
Rops1g01490 236 Gene3D - 6 151 IPR012677 -
Rops1g01490 236 SMART rrm1_1 68 141 IPR000504 GO:0003723
Rops1g01490 236 MobiDBLite consensus disorder prediction 143 236 - -
Rops1g01490 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Rops1g01490 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Rops1g01490 236 MobiDBLite consensus disorder prediction 161 198 - -
Rops1g01490 236 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01490 Rops-Chr1 32560745 32563258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01490 63 152 Eukaryotic Initiation Factors Gene Family AT1G49760 27.778 3.61e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01490 K12897 - gmx:100527350 291.197