Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01490 | ATGGCGGATTCTCCAGCAAGAAGGAATTCAAGATCCCCTTCTCCATGGAGGGCTCAGTCAAGATCCAGATCAAGGTCTAGGTCTAGGCCCAGGTCTCGGTCAAGATCTCTTGAAAAGCAGAGGCCAAGATCCCGCTCAAGAAGTCGTGGCAGATCAAGATCAAGAAGTCATGACAGAAATGAGATTAGAAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTCGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTGGTGGAGCCTCGTACACGTATTTCTCGTGGTTTTGCTTTTATTACTATGGAAACTGTTGAGGATGCAAACCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGATCACGAAGAAAGCGGGCAAGAACTCCTACACCTGGACACTATCTTGGTCTGAAAAGTACTAGAGATTATGGACATCGTGGTGACCGTGGAAGGTATCGAGGTGGATCTGGTCGAGATGATTATCCATATCGTAGGTCTCCAAGGCGCTCACCATATAGAGGTGGCAGGGATTATTCACCAAGGCACTCGCCATATGGTGGAAGATCTAGGAGGGATAGGTCCAGGTCACTTCCTTATTCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA | 711 | 0.4726 | MADSPARRNSRSPSPWRAQSRSRSRSRSRPRSRSRSLEKQRPRSRSRSRGRSRSRSHDRNEIRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMETVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGHRGDRGRYRGGSGRDDYPYRRSPRRSPYRGGRDYSPRHSPYGGRSRRDRSRSLPYSPYGSPDRRYARGSR* | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01490 | 236 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Rops1g01490 | 236 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 3 | 151 | - | - | |
Rops1g01490 | 236 | SUPERFAMILY | RNA-binding domain, RBD | 63 | 177 | IPR035979 | GO:0003676 | |
Rops1g01490 | 236 | CDD | RRM_SF | 69 | 141 | - | - | |
Rops1g01490 | 236 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Rops1g01490 | 236 | Gene3D | - | 6 | 151 | IPR012677 | - | |
Rops1g01490 | 236 | SMART | rrm1_1 | 68 | 141 | IPR000504 | GO:0003723 | |
Rops1g01490 | 236 | MobiDBLite | consensus disorder prediction | 143 | 236 | - | - | |
Rops1g01490 | 236 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 145 | IPR000504 | GO:0003723 | |
Rops1g01490 | 236 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 69 | 138 | IPR000504 | GO:0003723 | |
Rops1g01490 | 236 | MobiDBLite | consensus disorder prediction | 161 | 198 | - | - | |
Rops1g01490 | 236 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 60 | 224 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01490 | Rops-Chr1 | 32560745 | 32563258 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01490 | 63 | 152 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 27.778 | 3.61e-06 | 45.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01490 | K12897 | - | gmx:100527350 | 291.197 |