Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01462 ATGGTGATCTCTGGTGAAAAGAGTTCTAACCCAATCAACCCCACAAATCTTCAAGGAGGATTAAATTGTATGGATACCAGAAAAGTTGGGCAGAATAGAAGAGCTTTGAGTATCATCAACCAGAGTCTAGTGGAAGGTAGACCTTACCCTTGTGTGGTTAGCAAGAGGGCCTTGTCAGAAAAACATGATGTTTGCGAAAAGAAGCAGGCGGATCTGGTTCATCGACCCATCACCAGGAGGTTTGCTGCACAAATTGCTAGCACGCAGCAATCTCGTGCTGAGGAAACCAAGAAGTCCAACTTGACAATTTCAAATTCGAATGGATTTGGAGAGTGCATATTTATTGATGATGAACACAAGCCAACAGAAGACCAGCCAGTGCCCATGACTTTAGAACAAACAGAACCAATGAATAGTGAACCAGATCAGATGGAGGAAGTTGAAATGGAGGATATACTGGAAGAGCCTGTTTTGGACATTGATATCAGCGATGCAAATAATCCTCTCGCAGTCGTTGACTATATTGAAGATCTTTATTCCTACTATAGAAAAATGGAGAGTACTAGCTGTGTCTCACCAAATTATATGGCACAGCAATTTGACATTAATGAAAGAATGAGGGCTATACTGATTGACTGGCTCATTGAGGTCCATGACAAATTTGACCTCCTGCACGAAACATTGTTTCTTACGGTTAATCTTATAGATAGATTTTTGGAAAAGCAGACAGTAGTAAGAAAGAAACTTCAGTTGGTGGGTCTAGTTGCCATGCTTTTAGCATGCAAGTATGAAGAAGTTTCAGTGCCTGTGGTTGGAGATCTGATTCTTATATCAGACAAAGCATACACCAGGAAAGAAGTTCTTGAAATGGAGAAGTTAATGGTGAATACATTGCATTTTAACATGTCTGTTCCAACAGCATATGTTTTCATAAGAAGGTTCCTGAAGGCAGCTCAAGCAGACAAAAAGCTTGAGCTACTAGCTTTCTTCTTGGTTGAGCTGTCTCTGGTAGAATATGAGATGCTTAAGTTCCATCCATCTCTGCTAGCTGCAACTGCGGTCTATACAGCTCAGTGCACTATCTATGGTTTCAAACATTGGAATAAGACATGTGAATGGCACACCAATTACACAGAAGATCAGTTATTAGAGTGCTCTAGTTTAATGGTTGATTTTCACCAGAAGGCAGGTACTGGAAAACTTACAGGGGTGCATAGGAAGTACTGCACATCTAAATTTAACTACACTGCAAAATGTGAACCTGCAAGTTTTCTTCTGGAGAACCCATTGTAG 1293 0.406 MVISGEKSSNPINPTNLQGGLNCMDTRKVGQNRRALSIINQSLVEGRPYPCVVSKRALSEKHDVCEKKQADLVHRPITRRFAAQIASTQQSRAEETKKSNLTISNSNGFGECIFIDDEHKPTEDQPVPMTLEQTEPMNSEPDQMEEVEMEDILEEPVLDIDISDANNPLAVVDYIEDLYSYYRKMESTSCVSPNYMAQQFDINERMRAILIDWLIEVHDKFDLLHETLFLTVNLIDRFLEKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLHFNMSVPTAYVFIRRFLKAAQADKKLELLAFFLVELSLVEYEMLKFHPSLLAATAVYTAQCTIYGFKHWNKTCEWHTNYTEDQLLECSSLMVDFHQKAGTGKLTGVHRKYCTSKFNYTAKCEPASFLLENPL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01462 430 PANTHER CYCLINS 128 395 IPR039361 -
Rops1g01462 430 SUPERFAMILY Cyclin-like 304 422 IPR036915 -
Rops1g01462 430 PIRSF Cyclin_A_B_D_E 15 430 IPR046965 GO:0016538|GO:0044772
Rops1g01462 430 Pfam Cyclin, N-terminal domain 177 303 IPR006671 -
Rops1g01462 430 SMART Cyclin_C_2 305 422 IPR004367 -
Rops1g01462 430 SUPERFAMILY Cyclin-like 166 302 IPR036915 -
Rops1g01462 430 Gene3D - 191 303 - -
Rops1g01462 430 Gene3D - 177 417 - -
Rops1g01462 430 FunFam G2/mitotic-specific cyclin-1 292 417 - -
Rops1g01462 430 Pfam Cyclin, C-terminal domain 305 420 IPR004367 -
Rops1g01462 430 CDD CYCLIN_AtCycB-like_rpt1 154 300 - -
Rops1g01462 430 SMART cyclin_7 212 296 IPR013763 -
Rops1g01462 430 SMART cyclin_7 309 391 IPR013763 -
Rops1g01462 430 ProSitePatterns Cyclins signature. 207 238 IPR006671 -
Rops1g01462 430 CDD CYCLIN_AtCycB-like_rpt2 305 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01462 Rops-Chr1 32223812 32227209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01462 1 426 Core Cell Cycle Gene Families AT1G20610 58.891 3.03e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01462 K21777 - gmx:100798068 741.88