Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01459 ATGGGAGGTGACGCTGCTGCTGAGGGTGCGACGGAGCCGAAGACCGCCGCTGATGGAGTCAACATCAACATTCGTTGTTCTAATGGTTCCAAATTTTCCGTTCAGATTAGCCTCGATTCCACCGTCGAATCCTTTAAGGATGCTGTCGCTCGCAACTGCGACATAGCCGCTGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAAGACGATCAAACCCTACAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCCAATACAACTGGTGGGACTAATGCTAGTGGTGCCGATACCACAACAACTGATACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGTGCTTCACTGTTCCCGGGACCAGGTATCAATGGGATGGGGGGCAATGGCCTCAATGGCTTATTTGGAGCTGGCTTTCCTGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATATGGTGAGAGAAATAATGAACACACCTGCTATGCAGAATTTAATAAACAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAAATGCGAGAGCTCATGGATAGAAACCCTGAGCTGGCCCACATACTTAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAAGCTTCTCCCGAGGGGTTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAATATGGGAAATGATAGTGCCGGAATTTTGGGGACTCAAGGTGGCCAAACAAGGAATCAGTCAACGAATCCCTCAACTACTAGTTCTGAAGCAACCTCCCCCGTTCCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTGCCCAAAGTAACACCAGAAGGTCAACTCCTGGTGGGGATGCTCGACAGCAGATGCCAACTGGCTTAGGAGGGCCTGGTCTGCCAGATCTTGAAGGCATGTTGGGTGGTATGCCAGATGCTGCTTTGTTGACCCAATTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTCGGTGTCAATACTGAGCAGCGTGGCATGCCTGATCTAAATTCTCTGAGAGATGTGATGCAAAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCATTGAACAACTTGGGGCTGGAGATGTTATCAAGCATGTTTGGGGGACTTGGAGCTGGTAGCCTAGCCGTTCCCAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGGTTCTTTGACACTCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1617 0.4811 MGGDAAAEGATEPKTAADGVNINIRCSNGSKFSVQISLDSTVESFKDAVARNCDIAADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTGGTNASGADTTTTDTRGAGANEGGGLGGASLFPGPGINGMGGNGLNGLFGAGFPDLEQMQQPFLSNPNMVREIMNTPAMQNLINNPEIVRNLIMNNPQMRELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMAGNMGNDSAGILGTQGGQTRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGGAQSNTRRSTPGGDARQQMPTGLGGPGLPDLEGMLGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGSLNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01459 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Rops1g01459 538 FunFam Ubiquitin domain-containing protein DSK2b 191 247 - -
Rops1g01459 538 MobiDBLite consensus disorder prediction 94 116 - -
Rops1g01459 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Rops1g01459 538 SMART ubq_7 20 91 IPR000626 GO:0005515
Rops1g01459 538 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Rops1g01459 538 SUPERFAMILY Ubiquitin-like 12 106 IPR029071 -
Rops1g01459 538 MobiDBLite consensus disorder prediction 94 125 - -
Rops1g01459 538 Gene3D - 8 105 - -
Rops1g01459 538 Gene3D - 189 247 - -
Rops1g01459 538 MobiDBLite consensus disorder prediction 269 352 - -
Rops1g01459 538 CDD UBA_PLICs 496 534 - -
Rops1g01459 538 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Rops1g01459 538 CDD Ubl_Dsk2p_like 20 92 - -
Rops1g01459 538 SMART CBM 352 394 IPR006636 -
Rops1g01459 538 SMART CBM 194 233 IPR006636 -
Rops1g01459 538 SMART CBM 397 432 IPR006636 -
Rops1g01459 538 SMART CBM 140 181 IPR006636 -
Rops1g01459 538 MobiDBLite consensus disorder prediction 269 340 - -
Rops1g01459 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Rops1g01459 538 SMART uba_6 496 534 IPR015940 -
Rops1g01459 538 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Rops1g01459 538 PANTHER UBIQUILIN 16 533 IPR015496 -
Rops1g01459 538 Gene3D - 478 538 - -
Rops1g01459 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01459 Rops-Chr1 32172133 32177774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01459 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.61e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01459 K04523 - gmx:100797539 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01459 1 32172133 32177774 Rops1g01459 1 32172133 32177774 ECH