Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01455 ATGGGTCTCTGCTTTGGTTCACTCACTGTTAACACACCACACTCCAGCACCATCAGCCTGGGAAATGATCAAGTTTGGGAGATGGCAAGTCAAAGTTATAATAATAACATAGAAACACCAAACTTGAAGGTGTTTAGTTTTGCGGATTTGAAAGCTGCCACTAGGGGTTTCAAGTCTGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGTTGAATGAGAAGAGACTCACCCCTGCTAAAGCTGGTTCTGGAATCATGGTTGCCATCAAGAAATTGAACCCTGAAAGTATGCAAGGTTTTGAAGAGTGGCAGTCAGAAATCAACTTTTTAGGAAGGACTTCTCACCCCAACTTGGTCAAGCTATTGGGTTTCTGTAGAGAGGATGACGAATTTCTCCTTGTGTATGAGTTCATGTCAAAGGGAAGCTTGGAGAATCATCTCTTCAGAAGAAATATTAACATAGAATCACTTTCTTGGAACACCCGACTCAAAATAGCTATTGGTGCAGCTCGAGGCTTGGCTTTCTTGCACTCCTCAGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGGATTACAATGCAAAAATTTCAGATTTTGGCTTGGCTAAATTTGGGCCATCTGGGGGAGATTCACACGTGACTACCAGGGTCATGGGCACACATGGCTATGCTGCTCCAGAGTACATGGCAACAGGTCACTTATATGTCAAGAGTGATGTTTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAGGGTTGCAAGCATTTGATTTAAAGAGGCCCCCAGAGAAGCAAAATCTGGTTGAATGGAAGAAGCCTTCTCTCTCTGATAGAAGAAATTTGAAAACCATCATGGATGCTAAGATGGAGGGCCAATATTCACTAAAGGCAGCTTCCCAGGCTGCACAGCTTACTCTAAAATGCCTTGAACATGAACCTAAAAACCGTCCTTCTATGCAAGATGTTTTGGAGACATTGGAAAGCATCATAGCTATCAAGGATCAAAGTAAGAGATCCAAGAAACACCGTAATAAGTCTGCAGCTATGCACAAATTCCAATGCCCAGTGACCCGGCAATAA 1119 0.4263 MGLCFGSLTVNTPHSSTISLGNDQVWEMASQSYNNNIETPNLKVFSFADLKAATRGFKSDALLGEGGFGKVYKGWLNEKRLTPAKAGSGIMVAIKKLNPESMQGFEEWQSEINFLGRTSHPNLVKLLGFCREDDEFLLVYEFMSKGSLENHLFRRNINIESLSWNTRLKIAIGAARGLAFLHSSEKQVIYRDFKASNILLDGDYNAKISDFGLAKFGPSGGDSHVTTRVMGTHGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLQAFDLKRPPEKQNLVEWKKPSLSDRRNLKTIMDAKMEGQYSLKAASQAAQLTLKCLEHEPKNRPSMQDVLETLESIIAIKDQSKRSKKHRNKSAAMHKFQCPVTRQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01455 372 SUPERFAMILY Protein kinase-like (PK-like) 28 339 IPR011009 -
Rops1g01455 372 FunFam Serine/threonine-protein kinase BIK1 25 142 - -
Rops1g01455 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Rops1g01455 372 ProSiteProfiles Protein kinase domain profile. 57 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01455 372 MobiDBLite consensus disorder prediction 348 372 - -
Rops1g01455 372 FunFam Serine/threonine-protein kinase PBS1 143 359 - -
Rops1g01455 372 Gene3D Transferase(Phosphotransferase) domain 1 143 367 - -
Rops1g01455 372 ProSitePatterns Protein kinases ATP-binding region signature. 63 96 IPR017441 GO:0005524
Rops1g01455 372 Gene3D Phosphorylase Kinase; domain 1 27 142 - -
Rops1g01455 372 PIRSF TyrPK_CSF1-R 156 268 - -
Rops1g01455 372 PIRSF TyrPK_CSF1-R 58 170 - -
Rops1g01455 372 PIRSF TyrPK_CSF1-R 299 370 - -
Rops1g01455 372 Pfam Protein tyrosine and serine/threonine kinase 60 339 IPR001245 GO:0004672|GO:0006468
Rops1g01455 372 PANTHER OS01G0588500 PROTEIN-RELATED 36 342 - -
Rops1g01455 372 CDD STKc_IRAK 63 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01455 Rops-Chr1 32043274 32046572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01455 35 339 Glycoside Hydrolase AT3G07070 47.712 1.57e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops1g01455 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01455 - - gmx:100794193 525.398